[gmx-users] question about gmx do_dssp

[Mark Abraham]

Hi,

Isn't that figure what is in the xpm file?

Mark

On Fri, Aug 4, 2017 at 4:20 PM YanhuaOuyang <15901283893 at 163.com> wrote:

> Hi,
>    I have run a MD simulation and used gmx do_dssp to calculate the
> secondary structure content. The output files are md_dssp.xpm and
> scount.xvg. I want to know that each residue  belongs to what kind of
> secondary structure for each frame. But the scount.xvg output file only
> have the number of residues with each secondary structure and the total
> secondary structure count as a function of time. So,  can I get the
> information on "each residue belongs to which kind of secondary structure
> for each frame" to draw a figure of " amino acid vs secondary structure" ?
>
> Best regards,
> Ouyang
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