[gmx-users] Visualization of xtc file

[farial tavakoli]

 blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; }  Hi andrea
Thank you for replyYes i moved the speed control on the left but it wasnt affected. And now i went to graphical reprezentation and increased trajectory smoothing windows size but it was not ok too. It seems my protein has many aberrant bonds 

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On Monday, August 7, 2017, 2:24 PM, Andrea Spitaleri <andrea.spitaleri at iit.it> wrote:

Hi

please refer to VMD guide/manual/mailing list. You have different 
options to "decrease" the motion:

1. in VMD Main there is a speed control, just move to left with mouse

or/and

2.  in Graphical Representations under Trajectory tab you can increase 
the number of "Trajectory Smoothing Window Size".

HTH

and


On 07/08/2017 11:38, farial tavakoli wrote:
>  blockquote, div.yahoo_quoted { margin-left: 0 !important; border-left:1px #715FFA solid !important; padding-left:1ex !important; background-color:white !important; }  Dear gromacs user
> I am trying to view .gro and .xtc files of my complex by VMD but when i load first .gro and then .xtc files in vmd , it has so high motion , such that no molecules are viewable. Would you please help me how can i view it?
> ThanksFarial
>
>
> Sent from Yahoo Mail for iPhone
>  

-- 
Andrea Spitaleri PhD
Computational mOdelling of NanosCalE and bioPhysical sysTems - CONCEPT Lab
ISTITUTO ITALIANO DI TECNOLOGIA
Via Morego 30, 16163 - Genova, Italy
https://iit.it/research/lines/computational-modelling-of-nanoscale-and-biophysical-systems
cell: +39 3485188790
https://iit.it/andrea-spitaleri
ORCID: http://orcid.org/0000-0003-3012-3557

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