[gmx-users] remove the jumps over the boundaries

‪farial tavakoli‬ ‪ farial.tavakoli at ymail.com
Wed Aug 9 14:18:14 CEST 2017

Dear GROMACS users
I am using GROMACS 2016.3 and ran a md simulation on my complex. Now i need to visualize my .xtc file. When i loaded the confout.gro and traj_comp.xtc in VMD , it has pbc problem, so I issued this command:
trjconv -s topol.tpr -f traj.xtc -o protein.pdb -pbc nojump -dt 10
but faced to this error:
Fatal error:
reading tpx file (md_0_1.tpr) version 110 with version 83 program

is anybody help me to solve this problem?
thanks in advanceFarial

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