[gmx-users] PBC ISSUES IN GROMACS

Mark Abraham mark.j.abraham at gmail.com
Mon Aug 14 14:10:15 CEST 2017


http://www.gromacs.org/Documentation/Terminology/Periodic_Boundary_Conditions
had useful information

Mark

On Mon, 14 Aug 2017 09:17 Neha Gupta <nehaphysics17 at gmail.com> wrote:

> Hi gromacs users,
>
> After simulation for 5 ns, I generated a movie.pdb file using .gro and .xtc
>
> However, in the movie file, I witnessed bizarre long bonds...
>
> How to fix it?
>
> Any suggestions please?
>
>
> Thanks,
> Neha
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