[gmx-users] Gromacs enquiry
oagyapomg at gmail.com
Thu Aug 17 11:14:45 CEST 2017
Yes found some online resources but mostly for POPC. where do I get that
for other lipids
On Thursday, August 17, 2017, Mark Abraham <mark.j.abraham at gmail.com> wrote:
> There's numerous online resources that e.g. "membrane simulation in
> gromacs" will let you search for. Those describe lots of alternative tools
> that are suited for different force fields, membrane compositions,
> simulation software... Do explore some of them and if you have follow-up
> questions suited for GROMACS, please ask those here.
> On Wed, Aug 16, 2017 at 6:20 PM Odame Agyapong <oagyapomg at gmail.com>
>> My name is Odame and I am currently working on a project that requires
>> molecular dynamics. I plan using GROMACS for my simulations.
>> Specifically I would like to simulate a membrane protein in POPC, TFE,
>> DPC and DHPC lipid layers.
>> First, how do I build or obtain these lipid bilayers. Is there a
>> software or online resource I can go to obtain them or gromacs package
>> provides these lipids?
>> Initially i tried a POPC simulation in GROMACS and was getting errors
>> in topology outputs. I was therefore unable to continue to the next
>> steps .Is there a tutorial specifically for simulating in these
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