[gmx-users] ENERGY MINIMIZATION

[Subashini .K]

Hi Gromacs users,


I have installed gromacs in windows 7, 64 bit using cgywin.


I want to use the em.mdp file to grompp and generate a .tpr file.


In which terminal should the following commands be executed?


; to test
; grompp -f em.mdp -c test_GMX.gro -p test_GMX.top -o em.tpr -v
; mdrun -v -deffnm em

Can someone tell me?


Thanks,

Subashini.K