[gmx-users] ENERGY MINIMIZATION

[Mark Abraham]

Hi,

In a cygwin terminal, having source'd GMXRC (see the install guide), just
like you need to do under Linux.

Mark

On Tue, Jan 10, 2017 at 7:29 PM Subashini .K <subashinik at hotmail.com> wrote:

> Hi Gromacs users,
>
>
> I have installed gromacs in windows 7, 64 bit using cgywin.
>
>
> I want to use the em.mdp file to grompp and generate a .tpr file.
>
>
> In which terminal should the following commands be executed?
>
>
> ; to test
> ; grompp -f em.mdp -c test_GMX.gro -p test_GMX.top -o em.tpr -v
> ; mdrun -v -deffnm em
>
> Can someone tell me?
>
>
> Thanks,
>
> Subashini.K
>
>
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