[gmx-users] GROMACS IN CGYWIN

[Subashini .K]

Hi,


In cgywin, I typed this command


 source /usr/local/gromacs/bin/GMXRC

After that, cd  /way-to-the-required-directory/    was given


But, when


; test

is given, it says,


-bash: syntax error near unexpected token `;'


Gromacs was installed following the instructions in this website

https://winmostar.com/en/gmx4wm_en_win.html


How to rectify it? Please help.

Thanks,
Subashini.K



From: gromacs.org_gmx-users-bounces at maillist.sys.kth.se <gromacs.org_gmx-users-bounces at maillist.sys.kth.se> on behalf of Mark Abraham <mark.j.abraham at gmail.com>
Sent: Wednesday, January 11, 2017 12:30 AM
To: gmx-users at gromacs.org; gromacs.org_gmx-users at maillist.sys.kth.se
Subject: Re: [gmx-users] ENERGY MINIMIZATION

Hi,

In a cygwin terminal, having source'd GMXRC (see the install guide), just
like you need to do under Linux.

Mark

On Tue, Jan 10, 2017 at 7:29 PM Subashini .K <subashinik at hotmail.com> wrote:

> Hi Gromacs users,
>
>
> I have installed gromacs in windows 7, 64 bit using cgywin.
>
>
> I want to use the em.mdp file to grompp and generate a .tpr file.
>
>
> In which terminal should the following commands be executed?
>
>
> ; to test
> ; grompp -f em.mdp -c test_GMX.gro -p test_GMX.top -o em.tpr -v
> ; mdrun -v -deffnm em
>
> Can someone tell me?
>
>
> Thanks,
>
> Subashini.K
>
>
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