[gmx-users] converting .gro trajectory to .pdb

[Dawid das]

Hi,

I guess you can try
gmx trjconv -f  file.gro -o file.pdb -pbc mol -s file.tpr -center

2017-01-18 16:14 GMT+01:00 Irem Altan <irem.altan at duke.edu>:

> Hi,
>
> I have a trajectory saved in .gro format. It has multiple frames/snapshots
> in it. I’m using .gro format because I needed higher precision than
> standard .pdb precision, but now I can’t visualize it with VMD. I would
> like to convert this to .pdb, and I tried editconf to do this. The problem
> is, it only converts the first frame. How can I convert the entire
> trajectory from .gro to .pdb?
>
> Best,
> Irem
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