[gmx-users] VMD

[Tasneem Kausar]

May be atom number of your xtc and gro file are not same. Write a new gro
file with the same output you are taking for
xtc after skiping the frames.

On 25 Jan 2017 17:38, "Mark Abraham" <mark.j.abraham at gmail.com> wrote:

> Hi,
>
> Indeed. But unless someone knows what you did with trjconv, and how you
> used VMD differently, it will probably stay a mystery.
>
> Mark
>
> On Wed, 25 Jan 2017 11:49 RAHUL SURESH <drrahulsuresh at gmail.com> wrote:
>
> > Thank you mark.
> >
> > I think this problem prevails for many users. I came across a user forum
> > and found same issues.
> >
> > Anyway Thank you.
> >
> > On Wed, Jan 25, 2017 at 3:32 PM, Mark Abraham <mark.j.abraham at gmail.com>
> > wrote:
> >
> > > Hi,
> > >
> > > We can't guess.
> > >
> > > Mark
> > >
> > > On Wed, 25 Jan 2017 09:01 RAHUL SURESH <drrahulsuresh at gmail.com>
> wrote:
> > >
> > > > I tried that too but there is no visual
> > > >
> > > > Why is t.?
> > > > On Wed, 25 Jan 2017 at 1:07 PM, <jkrieger at mrc-lmb.cam.ac.uk> wrote:
> > > >
> > > > > Hi Rahul,
> > > > >
> > > > >
> > > > >
> > > > > VMD ran out of memory. Try using trjconv to create a new xtc with a
> > > > subset
> > > > >
> > > > > of atoms or a subset of frames.
> > > > >
> > > > >
> > > > >
> > > > > Best wishes
> > > > >
> > > > > James
> > > > >
> > > > >
> > > > >
> > > > > > I tried to visualize my xtc on VMD and the job get killed at 7000
> > > > frames
> > > > >
> > > > > >
> > > > >
> > > > > > why is that so?
> > > > >
> > > > > >
> > > > >
> > > > > > --
> > > > >
> > > > > > *Regards,*
> > > > >
> > > > > > *Rahul Suresh*
> > > > >
> > > > > > *Research Scholar*
> > > > >
> > > > > > *Bharathiar University*
> > > > >
> > > > > > *Coimbatore*
> > > > >
> > > > > > --
> > > > >
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> > --
> > *Regards,*
> > *Rahul Suresh*
> > *Research Scholar*
> > *Bharathiar University*
> > *Coimbatore*
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