[gmx-users] Issue with the PDB generated after topology

[Mark Abraham]

Hi,

I don't understand what you mean by "absent in terms of sequence." The
chain is there, and must have a sequence of residues. It might not be
numbered the same any more, since it is now part of a simulation, and not a
set of chains.

Mark

On Sun, 2 Jul 2017 22:32 Khadija Amine <kh.amine1 at gmail.com> wrote:

> Dear Mark,
>
> Thank you for your reply.
>
> My starting pdb sequence on pymol is: A 1-166, B 54-131
>
> After topology generation and solvation, I can display the whole structure
> with the two chains A and B but in terms of sequence, the chain B is
> absent.
>
> Please, let me know if any further information needed.
>
> Khadija
>
>
> *Khadija Amine*
> Ph.D. Biology and Health
> Biochemistry & Bioinformatics
> Phone: 33339584
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