[gmx-users] 'fudgeQQ' parameter in the topology file
Sara Del Galdo
sara.delgaldo at sns.it
Fri Jul 14 14:57:03 CEST 2017
Dear Gromacs user,
I read from the Gromacs Manual (version 5.1.2) that, while fudgeLJ is used
only when
generate pairs is set to ‘yes’, fudgeQQ is always used.
1. If I set fudgeQQ = 0.0, will gromacs annulate the 1-4 interactions ?
2. If I explicitly insert a (Coulomb 1-4) scaling factor in my [pairs]
section in the topology file, will Gromacs use both the scaling factor and
fudgeQQ ?
For example, how Gromacs will manage the following case (where the 4-th
coloumn in my pairs section is the scaling factor mentioned above)?
[ defaults ]
; nbfunc comb-rule gen-pairs fudgeLJ fudgeQQ
1 2 no 0.5 0.8333
[ pairs ]
; 1-4 interactions
1 8 2 0.833 -0.536 0.115 0.2875 0.14940
1 9 2 0.833 -0.536 0.117 0.2875 0.14940
1 10 2 0.833 -0.536 -0.033 0.3400 0.22821
1 23 2 0.833 -0.536 -0.327 0.3105 0.39527
: : : : : : : :
Thanks in advance.
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