[gmx-users] Regarding generating distance restraint

Chinmai P chinmai.p at gmail.com
Sat Jul 15 11:45:33 CEST 2017

I have a system in which a part of my protein molecule is manually
 inserted inside a liposome.
However, due to high mobility of lipids, the protein is coming out of the
Can you please suggest ways to stabilize the system?
One way I thought was to generate a distance restraint between COM of
liposome and COM of tip residues of protein inserted inside the liposome.
however, the distance restraint explained in gromacs manual were for
individual atoms.
Please suggest me how to generate  distance restraint for COM of group of


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