[gmx-users] "cmake" failed to install

[ZHANG Cheng]

After following Mario's link, I still could not solve it. The same problem happens.


My command line is:


lee at ubuntu:~/Jef/gromacs/gromacs-5.1.4/build$ cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
-- The CXX compiler identification is GNU 4.8.4
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- No compatible CUDA toolkit found (v4.0+), disabling native GPU acceleration
-- Performing Test CXXFLAGS_PRAGMA
-- Performing Test CXXFLAGS_PRAGMA - Success
-- Performing Test CXXFLAGS_WARN
-- Performing Test CXXFLAGS_WARN - Success
-- Performing Test CXXFLAGS_WARN_EXTRA
-- Performing Test CXXFLAGS_WARN_EXTRA - Success
-- Performing Test CXXFLAGS_WARN_UNDEF
-- Performing Test CXXFLAGS_WARN_UNDEF - Success
-- Performing Test CXXFLAGS_WARN_REL
-- Performing Test CXXFLAGS_WARN_REL - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
CMake Warning at cmake/gmxTestCompilerProblems.cmake:44 (message):
  The versions of the C and C++ compilers do not match (4.8.2 and 4.8.4,
  respectively).  Mixing different C/C++ compilers can cause problems.
Call Stack (most recent call first):
  CMakeLists.txt:310 (gmx_test_compiler_problems)




CMake Error at cmake/gmxManageSimd.cmake:67 (message):
  Cannot find AVX compiler flag.  Use a newer compiler, or choose SSE4.1 SIMD
  (slower).
Call Stack (most recent call first):
  cmake/gmxManageSimd.cmake:261 (gmx_give_fatal_error_when_simd_support_not_found)
  CMakeLists.txt:648 (gmx_manage_simd)




-- Configuring incomplete, errors occurred!
See also "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeOutput.log".
See also "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeError.log".





------------------ Original ------------------
From:  "mario";<mario at exactas.unlpam.edu.ar>;
Date:  Thu, Jun 1, 2017 02:44 PM
To:  "gmx-users"<gmx-users at gromacs.org>; 
Cc:  "gromacs.org_gmx-users"<gromacs.org_gmx-users at maillist.sys.kth.se>; "ZHANG Cheng"<272699575 at qq.com>; 
Subject:  Re: [gmx-users] "cmake" failed to install



Dear Cheng:
I solved that problem by following step by step instructions of the next
page:

https://bioinformaticsreview.com/20151126/how-to-install-gromacs-5-x-x-on-linux-ubuntu-14-04-lts/

Best Regards
Mario Campo
Dpto Física - UNLPam
La Pampa Argentina

> Dear Gromacs,
> I did the below on Ubuntu 14.04:
>
>
> tar xfz gromacs-5.1.4.tar.gz
> cd gromacs-5.1.4
> mkdir build
> cd build
>
>
>
> Then, I got error message when running:
> cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
>
>
> The error log files can be found here:
> https://1drv.ms/f/s!AjIs-W_id1LzobZfGThismE4so_SRQ
>
>
> Can I ask how to solve this?
>
>
> Thank you.
>
>
> Yours sincerely
> Cheng
> --
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