[gmx-users] "cmake" failed to install

[Mark Abraham]

Hi,

I don't think that cmake command can produce that result. Please remove
everything from the build directory and run that cmake command again.

I would also investigate why your compiler versions are mismatched. If you
are using the compilers provided by Ubuntu, then this is wildly unlikely to
happen. If you're using compilers you got somehow else, then I suggest you
stop doing that until you have things working with the standard compilers.

Mark

On Thu, Jun 1, 2017 at 3:21 PM ZHANG Cheng <272699575 at qq.com> wrote:

> After following Mario's link, I still could not solve it. The same problem
> happens.
>
>
> My command line is:
>
>
> lee at ubuntu:~/Jef/gromacs/gromacs-5.1.4/build$ cmake ..
> -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
> -- The CXX compiler identification is GNU 4.8.4
> -- Check for working CXX compiler: /usr/bin/c++
> -- Check for working CXX compiler: /usr/bin/c++ -- works
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- No compatible CUDA toolkit found (v4.0+), disabling native GPU
> acceleration
> -- Performing Test CXXFLAGS_PRAGMA
> -- Performing Test CXXFLAGS_PRAGMA - Success
> -- Performing Test CXXFLAGS_WARN
> -- Performing Test CXXFLAGS_WARN - Success
> -- Performing Test CXXFLAGS_WARN_EXTRA
> -- Performing Test CXXFLAGS_WARN_EXTRA - Success
> -- Performing Test CXXFLAGS_WARN_UNDEF
> -- Performing Test CXXFLAGS_WARN_UNDEF - Success
> -- Performing Test CXXFLAGS_WARN_REL
> -- Performing Test CXXFLAGS_WARN_REL - Success
> -- Performing Test CXXFLAGS_EXCESS_PREC
> -- Performing Test CXXFLAGS_EXCESS_PREC - Success
> -- Performing Test CXXFLAGS_COPT
> -- Performing Test CXXFLAGS_COPT - Success
> -- Performing Test CXXFLAGS_NOINLINE
> -- Performing Test CXXFLAGS_NOINLINE - Success
> CMake Warning at cmake/gmxTestCompilerProblems.cmake:44 (message):
>   The versions of the C and C++ compilers do not match (4.8.2 and 4.8.4,
>   respectively).  Mixing different C/C++ compilers can cause problems.
> Call Stack (most recent call first):
>   CMakeLists.txt:310 (gmx_test_compiler_problems)
>
>
>
>
> CMake Error at cmake/gmxManageSimd.cmake:67 (message):
>   Cannot find AVX compiler flag.  Use a newer compiler, or choose SSE4.1
> SIMD
>   (slower).
> Call Stack (most recent call first):
>   cmake/gmxManageSimd.cmake:261
> (gmx_give_fatal_error_when_simd_support_not_found)
>   CMakeLists.txt:648 (gmx_manage_simd)
>
>
>
>
> -- Configuring incomplete, errors occurred!
> See also
> "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeOutput.log".
> See also
> "/home/lee/Jef/gromacs/gromacs-5.1.4/build/CMakeFiles/CMakeError.log".
>
>
>
>
>
> ------------------ Original ------------------
> From:  "mario";<mario at exactas.unlpam.edu.ar>;
> Date:  Thu, Jun 1, 2017 02:44 PM
> To:  "gmx-users"<gmx-users at gromacs.org>;
> Cc:  "gromacs.org_gmx-users"<gromacs.org_gmx-users at maillist.sys.kth.se>;
> "ZHANG Cheng"<272699575 at qq.com>;
> Subject:  Re: [gmx-users] "cmake" failed to install
>
>
>
> Dear Cheng:
> I solved that problem by following step by step instructions of the next
> page:
>
>
> https://bioinformaticsreview.com/20151126/how-to-install-gromacs-5-x-x-on-linux-ubuntu-14-04-lts/
>
> Best Regards
> Mario Campo
> Dpto Física - UNLPam
> La Pampa Argentina
>
> > Dear Gromacs,
> > I did the below on Ubuntu 14.04:
> >
> >
> > tar xfz gromacs-5.1.4.tar.gz
> > cd gromacs-5.1.4
> > mkdir build
> > cd build
> >
> >
> >
> > Then, I got error message when running:
> > cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
> >
> >
> > The error log files can be found here:
> > https://1drv.ms/f/s!AjIs-W_id1LzobZfGThismE4so_SRQ
> >
> >
> > Can I ask how to solve this?
> >
> >
> > Thank you.
> >
> >
> > Yours sincerely
> > Cheng
> > --
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> >
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