[gmx-users] Vmd error

[Justin Lemkul]

On 6/16/17 6:12 AM, Quyen V. Vu wrote:
> Hi there
> 
>>
>> I extended my simulation of a free protein from 100ns to 150ns.
>> Corresponding files are extend.gro and extend.xtc.
>> I applied pbc conditions and my new xtc s newmd.xtc.
>>
>> I tried to visualise my trajectory in vmd
>>
>> I uploaded the extend.gro file and? loaded newmd.xtc in gro file. But I
>> couldn't visualise the trajectory. No frames are read. Am doing anythg
>> wrong?
>>
>> Thank you so much for your valuable advice.
>>
> 
> VMD cannot read *.xtc file,
> To visualize trajectory, you have to you trjconv module to remove pbc and
> convert xtc into gro file

That's not true at all.  VMD can read .xtc, .trr, etc just fine.

-Justin

-- 
==================================================

Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441
http://mackerell.umaryland.edu/~jalemkul

==================================================