[gmx-users] Vmd error

[Quyen V. Vu]

Hi there

>
> I extended my simulation of a free protein from 100ns to 150ns.
> Corresponding files are extend.gro and extend.xtc.
> I applied pbc conditions and my new xtc s newmd.xtc.
>
> I tried to visualise my trajectory in vmd
>
> I uploaded the extend.gro file and? loaded newmd.xtc in gro file. But I
> couldn't visualise the trajectory. No frames are read. Am doing anythg
> wrong?
>
> Thank you so much for your valuable advice.
>

VMD cannot read *.xtc file,
To visualize trajectory, you have to you trjconv module to remove pbc and
convert xtc into gro file
Best,
Quyen

<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=icon>
Virus-free.
www.avast.com
<https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail&utm_term=link>
<#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2>