[gmx-users] Pull in a channel

François-Régis Chalaoux chalaouxfr at gmail.com
Mon Jun 19 13:04:17 CEST 2017


Hi All,

I would like to pull a ligand in a channel from my protein and calculate
the PMF  with Umbrella sampling.

How to define in the md_pull.mdp configuration file all the transition
points of my pathtway through which my ligand must pass ?

 This channel is not rectilinear and is the result of a study carried out
with CAVER on my APO structure.

FR.


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