[gmx-users] error in phosphoserine simulation during MD

[Mark Abraham]

Hi,

You need to use a tool capable of doing the job. But it is unclear to
anyone reading this how phosphoserine relates to the problem, or what loop
needs to be built.

Mark

On Sun, 18 Jun 2017 22:07 marzieh dehghan <dehghanmarzieh at gmail.com> wrote:

> thank you very much
>
> I tried to complete pdb file, but since pdb file containing phosphoserine
> which is different from its sequence, because there is serine in its
> sequence file, when I wanted to use modeller, I confronted these error "
> sequence difference between alignment and pdb.
>
> I used another software such as autodock to complete these missing
> residues, but there was some errors
>
> I would like to know your suggestion about it.
>
> thanks a lot
>
> --
>
>
>
>
> *Marzieh DehghanPhD of BiochemistryInstitute of biochemistry and Biophysics
> (IBB)University of Tehran, Tehran- Iran.*
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