[gmx-users] gromacs-5.1.4 installation issue

Mark Abraham mark.j.abraham at gmail.com
Wed May 24 14:39:01 CEST 2017


Hi,

You should ask the cluster maintainers how they intend the compiler to be
used. You need to find the same infrastructure at run time as you used at
compile time, e.g. by loading the same modules.

Mark

On Wed, May 24, 2017 at 2:13 PM abhisek Mondal <abhisek.mndl at gmail.com>
wrote:

> Hi,
>
>    I have been trying to install latest version of gromacs (Gromacs-5.1.4)
> in my cluster.
>
> Installation went without any error. But whenever I'm giving the command:
> gmx_mpi
> An error report comes:
> gmx_mpi: /lib64/libz.so.1: no version information available (required by
> /app/gromacs-5.1.4/lib64/libgromacs_mpi.so.1)
> gmx_mpi: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found
> (required by /app/gromacs-5.1.4/lib64/libgromacs_mpi.so.1)
>
>
> Can you please help me out here, regarding what is going wrong here.
>
> Thank you.
>
> --
> Abhisek Mondal
>
> *Senior Research Fellow*
>
> *Structural Biology and Bioinformatics Division*
> *CSIR-Indian Institute of Chemical Biology*
>
> *Kolkata 700032*
>
> *INDIA*
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