[gmx-users] gromacs-5.1.4 installation issue

[abhisek Mondal]

On Wed, May 24, 2017 at 6:08 PM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> You should ask the cluster maintainers how they intend the compiler to be
> used. You need to find the same infrastructure at run time as you used at
> compile time, e.g. by loading the same modules.
>
> Yes I did check.
I have 2 cluster with identical configurations. In Cluster_1 it compiled
well and running nicely.
But in Cluster_2 it is giving this error.

To check the GLIBCXX version available in both Clusters, we used: strings
/usr/lib/libstdc++.so.6 | grep GLIBCXX
Output of BOTH clusters:
GLIBCXX_3.4
GLIBCXX_3.4.1
GLIBCXX_3.4.2
GLIBCXX_3.4.3
GLIBCXX_3.4.4
GLIBCXX_3.4.5
GLIBCXX_3.4.6
GLIBCXX_3.4.7
GLIBCXX_3.4.8
GLIBCXX_3.4.9
GLIBCXX_3.4.10
GLIBCXX_3.4.11
GLIBCXX_3.4.12
GLIBCXX_3.4.13
GLIBCXX_FORCE_NEW
GLIBCXX_DEBUG_MESSAGE_LENGTH

So, I'm confused regarding both the machine does not have  `GLIBCXX_3.4.15`
, then why in one machine /gromacs-5.1.4/lib64/libgromacs_mpi.so.1 is
raising error but not in the other ?

Is there any way to overcome this ? I'm really confused.

Some advice regarding this concern will be highly appreciated.

Thank you.



> Mark
>
> On Wed, May 24, 2017 at 2:13 PM abhisek Mondal <abhisek.mndl at gmail.com>
> wrote:
>
> > Hi,
> >
> >    I have been trying to install latest version of gromacs
> (Gromacs-5.1.4)
> > in my cluster.
> >
> > Installation went without any error. But whenever I'm giving the command:
> > gmx_mpi
> > An error report comes:
> > gmx_mpi: /lib64/libz.so.1: no version information available (required by
> > /app/gromacs-5.1.4/lib64/libgromacs_mpi.so.1)
> > gmx_mpi: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.15' not found
> > (required by /app/gromacs-5.1.4/lib64/libgromacs_mpi.so.1)
> >
> >
> > Can you please help me out here, regarding what is going wrong here.
> >
> > Thank you.
> >
> > --
> > Abhisek Mondal
> >
> > *Senior Research Fellow*
> >
> > *Structural Biology and Bioinformatics Division*
> > *CSIR-Indian Institute of Chemical Biology*
> >
> > *Kolkata 700032*
> >
> > *INDIA*
> > --
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-- 
Abhisek Mondal

*Senior Research Fellow*

*Structural Biology and Bioinformatics Division*
*CSIR-Indian Institute of Chemical Biology*

*Kolkata 700032*

*INDIA*