[gmx-users] Genion error
mohammad.r0325 at yahoo.com
Mon May 29 10:41:04 CEST 2017
Thank you Justin. Here is the link to access the topology file:https://www.dropbox.com/sh/x58tzpmg0vzkbtg/AADH_efF_s8jKx4OaHN8a7IPa?dl=0
By the way, I do not know about your advice. Can you please give me the link?
From: Justin Lemkul <jalemkul at vt.edu>
To: gmx-users at gromacs.org
Sent: Monday, 29 May 2017, 0:21:10
Subject: Re: [gmx-users] Genion error
On 5/28/17 3:43 AM, Mohammad Roostaie wrote:
> Hi All, when I wanted to add ions to the system, I got this error:
> Fatal error:No line with moleculetype 'SOL' found the [ molecules ] section of file 'gr.top'For more information and tips for troubleshooting, please check the GROMACSwebsite at http://www.gromacs.org/Documentation/Errors
> However, there is 'SOL' molecule type in the [ molecules ] section of the topology file. Can you please help me to solve this problem?
Upload your topology to a file-sharing service and provide the URL to access it.
There's no way to know what's going on (and I recall giving some previous
advice about line endings - have you checked this?)
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalemkul at outerbanks.umaryland.edu | (410) 706-7441
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