[gmx-users] is there any special tutorial for the interaction of nanosheet and amino acids?

[rose rahmani]

first thank you for your attntion, i made ZnS nanosheet with VNL
software,it has 33 atoms,i choosed vaccum gap,then i optimized and charged
it with gaussian03,the amino acid is threonin,for the first time i want to
study the interaction of these two structures, i am not even sure that my
nano sheet is suitable for this simulation or not,but for the as a
beginning i prfeer to test it.



On Wed, Oct 18, 2017 at 10:48 PM, Alex <nedomacho at gmail.com> wrote:

> Hi,
>
> That would probably depend on the nanosheet material, the particular amino
> acid, the solvent & ionic strength, temperature, etc, etc. But no, there is
> no tutorial and yes, a "nanosheet" can be viewed as a ligand. :)
>
> I don't know if this helps, but could you please first give us an idea of
> what you're trying to do?
>
> Alex
>
>
> On 10/18/2017 1:09 PM, rose rahmani wrote:
>
>> Hi
>>
>> I am a beginner user of GROMACS, i want to simulate the interaction of
>> nano
>> sheet with amino acid ,but i dont know what should do, how should i behave
>> with these structures ? is there any tutoroial for interaction of nano
>> sheet and amino acids?
>> is it like protein-ligand tutorial in GROMACS tutorial?
>>
>> with regards
>>
>> Rose
>>
>
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