[gmx-users] How good to use triclinic box for gormacs simulations?

[Kunal Dutta]

Hi,
Please check the link.
http://manual.gromacs.org/programs/gmx-editconf.html
Best, Kunal


On Tue, Oct 31, 2017 at 3:22 AM, vijayakumar gosu <vijayakumargosu at gmail.com
> wrote:

> Hello all,
>
>
> I have performed simulations for Protein RNA complex around 1500 residues.
> I have used triclinic box with 1.4 nm distance from the edge of the box to
> protein as triclinic box takes less number of water molecules (~100000)
> compared to other boxes . The simulation results looks fine and i am able
> to answer the biological question. however i have not seen many
> publications using triclinic box. Hence i am bit skeptical and like to
> know  there is any criteria to choose the simulation box.
>
>
> Thanks
> --
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-- 
---------------------------------------------------------
Regards.
Kunal Dutta
Senior Research Scholar
Microbiology and Immunology Laboratory
Department of Human Physiology with Community Health
Vidyasagar University, Medinipur-721102
West Bengal, India.
Cell: 9126181933
--------------------------------------------
ORCID ID: 0000-0002-0818-8787
RG: https://www.researchgate.net/profile/Kunal_Dutta2
GS: https://scholar.google.co.in/citations?user=ULby284AAAAJ&hl=en

-- 



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