[gmx-users] mpirun noticed that process rank 7 with PID 19160 on node compute-0-28.local exited on signal 11 (Segmentation fault).

[Justin Lemkul]

On 9/17/17 1:22 AM, Vidya R wrote:
> My log file is provided in the link below
> 
> Can you please look into it and let me know why the error arises?
> 
> I am feeding my commands in SGE cluster.   When I run it in my login node,
> gmx mdrun -v -deffnm eql runs well
> 
> 
> But, through qsub command, (with 8 processors) It says,
> 
> mpirun noticed that process rank 7 with PID 19160 on node
> compute-0-28.local exited on signal 11 (Segmentation fault).
> 
> Please help me.
> 
> I am unable to figure out, as to whether the problem is with the version of
> gromacs or the method of compiling.
> 
> 
> https://drive.google.com/file/d/0BxGqxeGwTDLbQW9OZDFuM1doUlU/view?usp=sharing
> 

I am unable to view the file, as it says I do not have permission.  Please 
change the access restrictions on it.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html

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