[gmx-users] mpirun noticed that process rank 7 with PID 19160 on node compute-0-28.local exited on signal 11 (Segmentation fault).
jalemkul at vt.edu
Sun Sep 17 15:05:14 CEST 2017
On 9/17/17 1:22 AM, Vidya R wrote:
> My log file is provided in the link below
> Can you please look into it and let me know why the error arises?
> I am feeding my commands in SGE cluster. When I run it in my login node,
> gmx mdrun -v -deffnm eql runs well
> But, through qsub command, (with 8 processors) It says,
> mpirun noticed that process rank 7 with PID 19160 on node
> compute-0-28.local exited on signal 11 (Segmentation fault).
> Please help me.
> I am unable to figure out, as to whether the problem is with the version of
> gromacs or the method of compiling.
I am unable to view the file, as it says I do not have permission. Please
change the access restrictions on it.
Justin A. Lemkul, Ph.D.
Virginia Tech Department of Biochemistry
303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061
jalemkul at vt.edu | (540) 231-3129
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