[gmx-users] gencof - creating inverted double bilayer systems

Carlos Navarro carlos.navarro87 at gmail.com
Fri Sep 29 15:10:33 CEST 2017

Dear all,
I’m currently running computational electrophysiology simulations which
need double bilayer systems.
I know that with gencof -f input.gro -nbox 1 1 2 -o output.gro I can
effectively create a duplicate of my system like
But what I need is to create a system like this:
(Image inverted) or like this:
Is there a way to do this with gencof solely? If not, what commands do you
suggest me to use?
Best regards and thanks in advance,

Carlos Navarro Retamal
Bioinformatic Engineering. PhD.
Postdoctoral Researcher in Center of Bioinformatics and Molecular
Universidad de Talca
Av. Lircay S/N, Talca, Chile
E: carlos.navarro87 at gmail.com or cnavarro at utalca.cl

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