[gmx-users] gencof - creating inverted double bilayer systems

David van der Spoel spoel at xray.bmc.uu.se
Sat Sep 30 09:51:02 CEST 2017

On 29/09/17 15:10, Carlos Navarro wrote:
> Dear all,
> I’m currently running computational electrophysiology simulations which
> need double bilayer systems.
> I know that with gencof -f input.gro -nbox 1 1 2 -o output.gro I can
> effectively create a duplicate of my system like
>>> But what I need is to create a system like this:
>>> (Image inverted) or like this:
>>> Is there a way to do this with gencof solely? If not, what commands do you
> suggest me to use?
try editconf -scale 1 1 -1

> Best regards and thanks in advance,
> Carlos
> ——————
> Carlos Navarro Retamal
> Bioinformatic Engineering. PhD.
> Postdoctoral Researcher in Center of Bioinformatics and Molecular
> Simulations
> Universidad de Talca
> Av. Lircay S/N, Talca, Chile
> E: carlos.navarro87 at gmail.com or cnavarro at utalca.cl

David van der Spoel, Ph.D., Professor of Biology
Head of Department, Cell & Molecular Biology, Uppsala University.
Box 596, SE-75124 Uppsala, Sweden. Phone: +46184714205.

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