[gmx-users] Centering the membrane for gmx h2order

[Searle Duay]

Hi gmx users,

I'm using gmx h2order for my lipid bilayer in water because I want to get
the average cosθ of water molecules from the center of my bilayer. However,
the membrane moves along the z-axis throughout the simulation, so I don't
think that I am getting the correct results. Is there a way that I can
center the bilayer similar to gmx density?

Thank you!

-- 
Searle Aichelle S. Duay
Ph.D. Student
Chemistry Department, University of Connecticut
searle.duay at uconn.edu