April 2018 Archives by date

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Starting: Sun Apr 1 02:07:51 CEST 2018
Ending: Mon Apr 30 23:03:17 CEST 2018
Messages: 504

[gmx-users] Installation Alex
[gmx-users] Dielectric Constant Iman Ahmadabadi
[gmx-users] Problem with unwrap coordinates using the -pbc nojump flag Μανώλης Σκούντζος
[gmx-users] Installation Kevin Boyd
[gmx-users] Centering the membrane for gmx h2order Searle Duay
[gmx-users] Dose gpu support on flatbottom restraint Bhupendra Dandekar
[gmx-users] Dielectric Constant Alex
[gmx-users] gmx potential Shreyas Kaptan
[gmx-users] Compute average forces along a trajectory Simone Orioli
[gmx-users] gmx potential Mark Abraham
[gmx-users] Compute average forces along a trajectory Mark Abraham
[gmx-users] Compute average forces along a trajectory Mark Abraham
[gmx-users] Centering the membrane for gmx h2order Mark Abraham
[gmx-users] gmx potential Shreyas Kaptan
[gmx-users] only SimdUnitTests (Failed) Alex
[gmx-users] only SimdUnitTests (Failed) Mark Abraham
[gmx-users] only SimdUnitTests (Failed) Alex
[gmx-users] only SimdUnitTests (Failed) Mark Abraham
[gmx-users] Centering the membrane for gmx h2order Searle Duay
[gmx-users] Possible to extract gro file from a tpr? Viveca Lindahl
[gmx-users] Regarding calculation of Spatial Distribution Function Dilip H N
[gmx-users] error in index file abhisek Mondal
[gmx-users] error in index file Joe Jordan
[gmx-users] error in index file abhisek Mondal
[gmx-users] error in index file Joe Jordan
[gmx-users] error in index file abhisek Mondal
[gmx-users] error in index file Joe Jordan
[gmx-users] Possible to extract gro file from a tpr? ABEL Stephane
[gmx-users] Compute average forces along a trajectory Simone Orioli
[gmx-users] Possible to extract gro file from a tpr? Mark Abraham
[gmx-users] Possible to extract gro file from a tpr? Mark Abraham
[gmx-users] error in index file Justin Lemkul
[gmx-users] Number of Xeon cores per GTX 1080Ti Jochen Hub
[gmx-users] Number of Xeon cores per GTX 1080Ti Szilárd Páll
[gmx-users] Number of Xeon cores per GTX 1080Ti Szilárd Páll
[gmx-users] Number of Xeon cores per GTX 1080Ti Jochen Hub
[gmx-users] Number of Xeon cores per GTX 1080Ti Szilárd Páll
[gmx-users] gmx_mpi works in command line but not in script Alex
[gmx-users] Performance Szilárd Páll
[gmx-users] gmx_mpi works in command line but not in script Mark Abraham
[gmx-users] gmx_mpi works in command line but not in script Alex
[gmx-users] gmx_mpi works in command line but not in script Mark Abraham
[gmx-users] gmx_mpi works in command line but not in script Alex
[gmx-users] gmx_mpi works in command line but not in script Mark Abraham
[gmx-users] gmx_mpi works in command line but not in script Marc Hoemberger
[gmx-users] Perturbing Proteins Sanyam Kapoor
[gmx-users] gmx_mpi works in command line but not in script Alex
[gmx-users] Perturbing Proteins Qasim Pars
[gmx-users] Problems with Ionic Liquid Simulations Joshua Cummings
[gmx-users] Regarding calculation of Spatial Distribution Function Dilip H N
[gmx-users] gibbs free energy calculation Raag Saluja
[gmx-users] Perturbing Proteins Joe Jordan
[gmx-users] gromacs paper Tomaz Zorec
[gmx-users] Fixing dssp images using m2p file Alex Mathew
[gmx-users] gibbs free energy calculation Mark Abraham
[gmx-users] Problem with unwrap coordinates using the -pbc nojump flag Μανώλης Σκούντζος
[gmx-users] gmx_mpi works in command line but not in script Marc Hoemberger
[gmx-users] gibbs free energy calculation Justin Lemkul
[gmx-users] Fixing dssp images using m2p file Justin Lemkul
[gmx-users] gmx_mpi works in command line but not in script Mark Abraham
[gmx-users] Problems with Ionic Liquid Simulations Justin Lemkul
[gmx-users] Regarding calculation of Spatial Distribution Function Mark Abraham
[gmx-users] Regarding calculation of Spatial Distribution Function Mark Abraham
[gmx-users] Number of Xeon cores per GTX 1080Ti Raman Preet Singh
[gmx-users] Number of Xeon cores per GTX 1080Ti Szilárd Páll
[gmx-users] Xeon Phi's Re: Number of Xeon cores per GTX 1080Ti Szilárd Páll
[gmx-users] gibbs calculation: job.sh Raag Saluja
[gmx-users] Perturbing Proteins Sanyam Kapoor
[gmx-users] Perturbing Proteins Mark Abraham
[gmx-users] Dielectric Constant: Theory and Implementation Iman Ahmadabadi
[gmx-users] Perturbing Proteins Sanyam Kapoor
[gmx-users] Perturbing Proteins Mark Abraham
[gmx-users] Perturbing Proteins Sanyam Kapoor
[gmx-users] charmm-gui m g
[gmx-users] Fwd: Implicit solvent simulations using GROMACS-2016 Sai Pooja
[gmx-users] Fwd: Implicit solvent simulations using GROMACS-2016 Mark Abraham
[gmx-users] charmm-gui Justin Lemkul
[gmx-users] gibbs calculation: job.sh Justin Lemkul
[gmx-users] viscosity calculation using g_energy Jo
[gmx-users] Number of Xeon cores per GTX 1080Ti Jochen Hub
[gmx-users] charmm-gui m g
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] anyone have a development version or fork of gromacs that puts bonded interactions on the GPUs? Christopher Neale
[gmx-users] viscosity calculation using g_energy David van der Spoel
[gmx-users] Regarding calculation of Spatial Distribution Function Christopher Neale
[gmx-users] Regarding calculation of Spatial Distribution Function Christopher Neale
[gmx-users] anyone have a development version or fork of gromacs that puts bonded interactions on the GPUs? Kevin Boyd
[gmx-users] anyone have a development version or fork of gromacs that puts bonded interactions on the GPUs? Christopher Neale
[gmx-users] viscosity calculation using g_energy Ali Ahmed
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites ABEL Stephane
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites Anthony Nash
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites ABEL Stephane
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites Anthony Nash
[gmx-users] How to search answers for previous posts? ZHANG Cheng
[gmx-users] How to search answers for previous posts? Szilárd Páll
[gmx-users] chain separator issue for the "gmx do_dssp": do NOT need to provide a "ss.map" file ZHANG Cheng
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites Viveca Lindahl
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites ABEL Stephane
[gmx-users] Number of Xeon cores per GTX 1080Ti Szilárd Páll
[gmx-users] chain separator issue for the "gmx do_dssp": do NOT need to provide a "ss.map" file ZHANG Cheng
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] using constant velocities during simulation Qasim Pars
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] gmx select and gmx trjconv or gmx density Dan Gil
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] GROMACS 2018 MDRun: Multiple Ranks/GPU Issue Hollingsworth, Bobby
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] High pressure in coarse-grained parametrization Alex
[gmx-users] OPLS3 forcefield Neha Gupta
[gmx-users] GROMACS 2018 MDRun: Multiple Ranks/GPU Issue Szilárd Páll
[gmx-users] Problem with CUDA Szilárd Páll
[gmx-users] help with orientation restraints Hanin Omar
[gmx-users] The problem of adding 4 peptides in CHARMM-GUI m g
[gmx-users] OPLS3 forcefield Smith, Micholas D.
[gmx-users] OPLS3 forcefield Alex
[gmx-users] viscosity calculation using g_energy Ali Ahmed
[gmx-users] viscosity calculation using g_energy David van der Spoel
[gmx-users] gibbs calculation Raag Saluja
[gmx-users] degrees of freedom and position restraint Qasim Pars
[gmx-users] gibbs calculation Justin Lemkul
[gmx-users] viscosity calculation using g_energy Ali Ahmed
[gmx-users] viscosity calculation using g_energy David van der Spoel
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] Problem with CUDA Borchert, Christopher B ERDC-RDE-ITL-MS Contractor
[gmx-users] golp-CHARMM Sun Moon
[gmx-users] problem in running job.sh for free energy calculations. neelam wafa
[gmx-users] problem in running job.sh for free energy calculations. neelam wafa
[gmx-users] problem in running job.sh for free energy calculations. Justin Lemkul
[gmx-users] Carbon-Alpha RMSD Plots jt555
[gmx-users] problem in running job.sh for free energy calculations. Mark Abraham
[gmx-users] Carbon-Alpha RMSD Plots Mark Abraham
[gmx-users] High pressure in coarse-grained parametrization Mark Abraham
[gmx-users] problem in running job.sh for free energy calculations. neelam wafa
[gmx-users] gmx select and gmx trjconv or gmx density Mark Abraham
[gmx-users] problem in running job.sh for free energy calculations. neelam wafa
[gmx-users] using constant velocities during simulation Mark Abraham
[gmx-users] problem in running job.sh for free energy calculations. Justin Lemkul
[gmx-users] anyone have a development version or fork of gromacs that puts bonded interactions on the GPUs? Mark Abraham
[gmx-users] problem in running job.sh for free energy calculations. neelam wafa
[gmx-users] -rerun with energygrps Alex
[gmx-users] -rerun with energygrps Mark Abraham
[gmx-users] -rerun with energygrps Alex
[gmx-users] -rerun with energygrps Alex
[gmx-users] Freezing atoms, energy group exclusion and pressure calculation Mateusz Bieniek
[gmx-users] Regarding Coulomb-14 Energy zaved at tezu.ernet.in
[gmx-users] Error when for gmx tune_pme on Cray Viveca Lindahl
[gmx-users] Speed up simulations with GROMACS with virtual interaction sites Erik Marklund
[gmx-users] Error when for gmx tune_pme on Cray Kutzner, Carsten
[gmx-users] Error when for gmx tune_pme on Cray Mark Abraham
[gmx-users] Regarding Coulomb-14 Energy Mark Abraham
[gmx-users] Regarding Coulomb-14 Energy Mark Abraham
[gmx-users] Error when for gmx tune_pme on Cray Viveca Lindahl
[gmx-users] gmx select and gmx trjconv or gmx density Dan Gil
[gmx-users] Error when for gmx tune_pme on Cray Mark Abraham
[gmx-users] Error when for gmx tune_pme on Cray Viveca Lindahl
[gmx-users] Error when for gmx tune_pme on Cray Kutzner, Carsten
[gmx-users] Membrane tutorial regarding, RAHUL SURESH
[gmx-users] Membrane tutorial regarding, Justin Lemkul
[gmx-users] Membrane tutorial regarding, RAHUL SURESH
[gmx-users] Membrane tutorial regarding, Justin Lemkul
[gmx-users] Membrane tutorial regarding, RAHUL SURESH
[gmx-users] GMX hbond Dhumal, Nilesh
[gmx-users] GMX hbond Justin Lemkul
[gmx-users] GMX hbond Dhumal, Nilesh
[gmx-users] GMX hbond Justin Lemkul
[gmx-users] GMX hbond Dhumal, Nilesh
[gmx-users] GMX hbond Justin Lemkul
[gmx-users] Protein atomic charges modeling question Thanh Le
[gmx-users] viscosity calculation using g_energy Jo
[gmx-users] Protein atomic charges modeling question Joe Jordan
[gmx-users] affect of water removal on subsequent energy calculations Harry Mark Greenblatt
[gmx-users] affect of water removal on subsequent energy calculations Alex
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Dilip.H.N
[gmx-users] affect of water removal on subsequent energy calculations Harry Mark Greenblatt
[gmx-users] affect of water removal on subsequent energy calculations Alex
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Joe Jordan
[gmx-users] affect of water removal on subsequent energy calculations Harry Mark Greenblatt
[gmx-users] g_sans calculation Alexey Shvetsov
[gmx-users] bug in trjconv? Harry Mark Greenblatt
[gmx-users] affect of water removal on subsequent energy calculations Justin Lemkul
[gmx-users] bug in trjconv? Justin Lemkul
[gmx-users] bug in trjconv? Mark Abraham
[gmx-users] affect of water removal on subsequent energy calculations Mark Abraham
[gmx-users] Freezing atoms, energy group exclusion and pressure calculation Mark Abraham
[gmx-users] bug in trjconv? Harry Mark Greenblatt
[gmx-users] OPLS3 forcefield Krzysztof Kolman
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Marc Hoemberger
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation Mark Abraham
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] Criteria used to get DIHEDRAL DISTRIBUTION at discrete points sanjeet kumar singh ch16d012
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] Criteria used to get DIHEDRAL DISTRIBUTION at discrete points Justin Lemkul
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] RMSF started increasing after 60 ns simulation MD
[gmx-users] Triclinic box of solvent Pelin S Bulutoglu
[gmx-users] RMSF started increasing after 60 ns simulation Justin Lemkul
[gmx-users] affect of water removal on subsequent energy calculations Alex
[gmx-users] affect of water removal on subsequent energy calculations Justin Lemkul
[gmx-users] affect of water removal on subsequent energy calculations Alex
[gmx-users] How to post a reply on user list? sanjeet kumar singh ch16d012
[gmx-users] How to post a reply on user list? RAHUL SURESH
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Dilip.H.N
[gmx-users] gromacs.org_gmx-users Digest, Vol 168, Issue 45 zaved at tezu.ernet.in
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Joe Jordan
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Dilip.H.N
[gmx-users] changing the time frame for simmulation neelam wafa
[gmx-users] changing the time frame for simmulation neelam wafa
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Joe Jordan
[gmx-users] GPU Command zaved at tezu.ernet.in
[gmx-users] GPU Command Mark Abraham
[gmx-users] GPU Command Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 168, Issue 45 Justin Lemkul
[gmx-users] changing the time frame for simmulation Justin Lemkul
[gmx-users] changing the time frame for simmulation neelam wafa
[gmx-users] changing the time frame for simmulation Justin Lemkul
[gmx-users] changing the time frame for simmulation neelam wafa
[gmx-users] Formatting of spacing in .top and .itp files Andrew DeYoung
[gmx-users] Formatting of spacing in .top and .itp files Justin Lemkul
[gmx-users] two peptides in simulation tend to stick together MD
[gmx-users] Gmx hbond rose rahmani
[gmx-users] Polarizability analysis rose rahmani
[gmx-users] force field parameters for Fe3O4? leila karami
[gmx-users] force field parameters for Fe3O4? Paul bauer
[gmx-users] force field parameters for Fe3O4? rose rahmani
[gmx-users] force field parameters for Fe3O4? Paul bauer
[gmx-users] force field parameters for Fe3O4? rose rahmani
[gmx-users] trjconv ndec not working Eric Smoll
[gmx-users] trjconv ndec not working Eric Smoll
[gmx-users] calculating pairwise interactions Sahithya S Iyer
[gmx-users] md simulation of circular rna Atila Petrosian
[gmx-users] md simulation of circular rna Viveca Lindahl
[gmx-users] Free Energy calculatio Anjali Patel
[gmx-users] trjconv ndec not working Joe Jordan
[gmx-users] calculating pairwise interactions Mark Abraham
[gmx-users] Free Energy calculatio Mark Abraham
[gmx-users] calculating pairwise interactions Sahithya S Iyer
[gmx-users] Domain decomposition error Dawid das
[gmx-users] Domain decomposition error Justin Lemkul
[gmx-users] calculating pairwise interactions Justin Lemkul
[gmx-users] force field parameters for Fe3O4? Justin Lemkul
[gmx-users] Polarizability analysis Justin Lemkul
[gmx-users] Gmx hbond Justin Lemkul
[gmx-users] two peptides in simulation tend to stick together Justin Lemkul
[gmx-users] trjconv ndec not working Eric Smoll
[gmx-users] Domain decomposition error Dawid das
[gmx-users] Errors faced in reproducing simulation in Gromacs 2018.1 that works fine in v. 4.6.x Neelima S.
[gmx-users] Errors faced in reproducing simulation in Gromacs 2018.1 that works fine in v. 4.6.x Neelima S.
[gmx-users] build virus envelop sunyeping
[gmx-users] Dihedral Angle Distribution Anjana Jayasinghe
[gmx-users] REMD Simulation ISHRAT JAHAN
[gmx-users] Gmx_solvate rose rahmani
[gmx-users] gromos54a7 - topolbuild Alex
[gmx-users] Definiting protonation in pdb2gmx input mhuhtala at abo.fi
[gmx-users] Definiting protonation in pdb2gmx input Justin Lemkul
[gmx-users] Gmx_solvate Justin Lemkul
[gmx-users] Dihedral Angle Distribution Justin Lemkul
[gmx-users] build virus envelop Justin Lemkul
[gmx-users] Gmx_solvate rose rahmani
[gmx-users] Gmx_solvate Justin Lemkul
[gmx-users] gromos54a7 - topolbuild Ray, Bruce D
[gmx-users] Definiting protonation in pdb2gmx input mhuhtala at abo.fi
[gmx-users] Definiting protonation in pdb2gmx input Justin Lemkul
[gmx-users] Definiting protonation in pdb2gmx input mhuhtala at abo.fi
[gmx-users] WARNING: Listed nonbonded interaction between particles X and Y at distance faride badalkhani
[gmx-users] WARNING: Listed nonbonded interaction between particles X and Y at distance Mark Abraham
[gmx-users] calculating pairwise interactions Nikhil Maroli
[gmx-users] GPU Command Nikhil Maroli
[gmx-users] Free Energy calculation Anjali Patel
[gmx-users] Fwd: REMD Simulation ISHRAT JAHAN
[gmx-users] REMD Simulation Mark Abraham
[gmx-users] CGenff parameters in gromacs but missing in charmm package Fabian Keller
[gmx-users] CGenff parameters in gromacs but missing in charmm package Fabian Keller
[gmx-users] Installation of g_mmpbsa with Gromacs 2016.3 Hermann, Johannes
[gmx-users] Error in full MD ISHRAT JAHAN
[gmx-users] Error in full MD RAHUL SURESH
[gmx-users] installion of gromacs 5.07 SHAHEE ISLAM
[gmx-users] Error in full MD ISHRAT JAHAN
[gmx-users] Error in gmx trjcat Syed Azeem
[gmx-users] Fwd: installion of gromacs 5.07 SHAHEE ISLAM
[gmx-users] installion of gromacs 5.07 Mark Abraham
[gmx-users] Error in gmx trjcat Mark Abraham
[gmx-users] Error in gmx trjcat Mark Abraham
[gmx-users] installion of gromacs 5.07 SHAHEE ISLAM
[gmx-users] installion of gromacs 5.07 Mark Abraham
[gmx-users] Error in gmx trjcat Syed Azeem
[gmx-users] Issues using Implicit Solvent with Charmm 27 Juan José Galano Frutos
[gmx-users] Error in gmx trjcat Mark Abraham
[gmx-users] CGenff parameters in gromacs but missing in charmm package Justin Lemkul
[gmx-users] Error in gmx trjcat Syed Azeem
[gmx-users] Error in gmx trjcat Mark Abraham
[gmx-users] CGenff parameters in gromacs but missing in charmm package Fabian Keller
[gmx-users] CGenff parameters in gromacs but missing in charmm package Justin Lemkul
[gmx-users] trjconv ndec not working Paul Bauer
[gmx-users] trjconv ndec not working Mark Abraham
[gmx-users] trjconv ndec not working Eric Smoll
[gmx-users] 3dc warning Eric Smoll
[gmx-users] simulation crash Andrea Spitaleri
[gmx-users] Length of a constrained bond Eric Smoll
[gmx-users] Error in gmx trjcat Syed Azeem
[gmx-users] gmx wham (again) Alex
[gmx-users] GPU Command zaved at tezu.ernet.in
[gmx-users] Error in gmx trjcat Mark Abraham
[gmx-users] Length of a constrained bond Mark Abraham
[gmx-users] Regarding Coulomb-14 Energy zaved at tezu.ernet.in
[gmx-users] Error in gmx trjcat Syed Azeem
[gmx-users] Regarding Coulomb-14 Energy Mark Abraham
[gmx-users] trjconv ndec not working Dawid das
[gmx-users] Regarding Coulomb-14 Energy Mark Abraham
[gmx-users] trjconv ndec not working Dawid das
[gmx-users] gmx wham (again) Justin Lemkul
[gmx-users] Regarding Coulomb-14 Energy Justin Lemkul
[gmx-users] trjconv ndec not working Justin Lemkul
[gmx-users] Gromacs 2018 and 2018.1 bug? Atoms/molecules in freezegrps keep moving Bui, Tai
[gmx-users] Gromacs 2018 and 2018.1 bug? Atoms/molecules in freezegrps keep moving Mark Abraham
[gmx-users] Gromacs 2018 and 2018.1 bug? Atoms/molecules in freezegrps keep moving Bui, Tai
[gmx-users] gmx wham (again) Alex
[gmx-users] gmx wham (again) Alex
[gmx-users] gmx wham (again) Justin Lemkul
[gmx-users] GPU Command Hollingsworth, Bobby
[gmx-users] gmx wham (again) Alex
[gmx-users] gmx wham (again) Alex
[gmx-users] gmx wham (again) Alex
[gmx-users] v-rescale Iman Ahmadabadi
[gmx-users] Umbrella Sampling with water molecules flying away from the reference point Ben Tam
[gmx-users] gmx wham (again) Justin Lemkul
[gmx-users] PBC fix for visualization Mohsen Ramezanpour
[gmx-users] installing Gromacs on windows using cygwin Hossein Geraili
[gmx-users] installing Gromacs on windows using cygwin Hossein Geraili
[gmx-users] gmx wham (again) Alex
[gmx-users] installing Gromacs on windows using cygwin Mark Abraham
[gmx-users] Dihedral Angle Distribution Anjana Jayasinghe
[gmx-users] gmx wham (again) Alex
[gmx-users] Regarding getting the coordinates within certain region of amino-acid Dilip.H.N
[gmx-users] Error with virtual sites Ramon Crehuet
[gmx-users] two peptides in simulation tend to stick together MD
[gmx-users] suggest journals Rana Rehan Khalid
[gmx-users] How can I convert psf file to top 1185201182
[gmx-users] suggest journals Victor Rosas Garcia
[gmx-users] Running on multiple GPUs Searle Duay
[gmx-users] Running on multiple GPUs Hollingsworth, Bobby
[gmx-users] C-formats of forcefield file sections Krzysztof Kolman
[gmx-users] Running on multiple GPUs Searle Duay
[gmx-users] C-formats of forcefield file sections Krzysztof Kolman
[gmx-users] tracking position of single particle Jo
[gmx-users] Fraction of trans dihedrals Anjana Jayasinghe
[gmx-users] Dihedral Angle Distribution Justin Lemkul
[gmx-users] gmx wham (again) Justin Lemkul
[gmx-users] How can I convert psf file to top Justin Lemkul
[gmx-users] C-formats of forcefield file sections Justin Lemkul
[gmx-users] tracking position of single particle Justin Lemkul
[gmx-users] gmx wham (again) Alex
[gmx-users] Gromacs 2018.1 and GROMACS Tutorial (Justin A. Lemkul) Adarsh V. K.
[gmx-users] Gromacs 2018.1 and GROMACS Tutorial (Justin A. Lemkul) Adarsh V. K.
[gmx-users] Lincs Errors Crashing Simulation Eric Smoll
[gmx-users] Gmx_solvate rose rahmani
[gmx-users] installing Gromacs on windows using cygwin Hossein Geraili
[gmx-users] installing Gromacs on windows using cygwin Mark Abraham
[gmx-users] Gromacs 2018.1 and GROMACS Tutorial (Justin A. Lemkul) Mark Abraham
[gmx-users] Lincs Errors Crashing Simulation Mark Abraham
[gmx-users] Fraction of trans dihedrals Justin Lemkul
[gmx-users] Gmx_solvate Justin Lemkul
[gmx-users] Well known domain decomposition Alex
[gmx-users] Well known domain decomposition Mark Abraham
[gmx-users] High rmsf value SAYAN BHATTACHARJEE
[gmx-users] High rmsf value Justin Lemkul
[gmx-users] Well known domain decomposition Alex
[gmx-users] High rmsf value SAYAN BHATTACHARJEE
[gmx-users] High rmsf value Justin Lemkul
[gmx-users] Fundamental Units of MDS Package (time unit t = 48.88821 femtoseconds) jt555
[gmx-users] Error in GROMACS 2018.1 regression testing - "make check" gives "symbol lookup errors" Steven Sheridan
[gmx-users] How to resolve Inconsistent moves, Graphene sheet simulation with Gromacs 5.1.4 Edwine Tendong
[gmx-users] How to resolve Inconsistent moves, Graphene sheet simulation with Gromacs 5.1.4 Alex
[gmx-users] How to resolve Inconsistent moves, Graphene sheet simulation with Gromacs 5.1.4 Edwine Tendong
[gmx-users] Fundamental Units of MDS Package (time unit t = 48.88821 femtoseconds) Mark Abraham
[gmx-users] Fundamental Units of MDS Package (time unit t = 48.88821 femtoseconds) Mark Abraham
[gmx-users] How to resolve Inconsistent moves, Graphene sheet simulation with Gromacs 5.1.4 Alex
[gmx-users] gmx not found Huang, Tina
[gmx-users] Predict Physical Properties of Novel Proteins Academic Research
[gmx-users] gmx not found Tina Huang
[gmx-users] gmx not found Justin Lemkul
[gmx-users] gmx not found Tina Huang
[gmx-users] Predict Physical Properties of Novel Proteins Justin Lemkul
[gmx-users] gmx not found Tina Huang
[gmx-users] gmx not found Justin Lemkul
[gmx-users] Predict Physical Properties of Novel Proteins Anthony Nash
[gmx-users] Gromacs 2018.1 Errors while working with tutorial Adarsh V. K.
[gmx-users] installing Gromacs on windows using cygwin Hossein Geraili
[gmx-users] installing Gromacs on windows using cygwin Vytautas Rakeviius
[gmx-users] Gromacs 2018.1 Errors while working with tutorial Justin Lemkul
[gmx-users] installing Gromacs on windows using cygwin Vytautas Rakeviius
[gmx-users] partial charges leading to non-zero total charge/floating point arithmetic Shayna Hilburg
[gmx-users] partial charges leading to non-zero total charge/floating point arithmetic Justin Lemkul
[gmx-users] Writing PDB file so that protonation state of HIS is explicit by name Dawid das
[gmx-users] gmx wham (again) Jochen Hub
[gmx-users] Writing PDB file so that protonation state of HIS is explicit by name Justin Lemkul
[gmx-users] Writing PDB file so that protonation state of HIS is explicit by name Dawid das
[gmx-users] Writing PDB file so that protonation state of HIS is explicit by name Justin Lemkul
[gmx-users] Writing PDB file so that protonation state of HIS is explicit by name Mark Abraham
[gmx-users] Rotation in gmx traj Iman Ahmadabadi
[gmx-users] gmx_mpi -nt Alex
[gmx-users] (no subject) rose rahmani
[gmx-users] (no subject) Justin Lemkul
[gmx-users] gmx_mpi -nt Justin Lemkul
[gmx-users] gmx_mpi -nt Alex
[gmx-users] gmx_mpi -nt Justin Lemkul
[gmx-users] gmx_mpi -nt Mark Abraham
[gmx-users] gmx traj output Mohsen Ramezanpour
[gmx-users] Gromacs 2018.1 Errors while working with tutorial; gromacs.org_gmx-users Digest, Vol 168, Issue 101 Adarsh V. K.
[gmx-users] Gromacs 2018.1 Errors while working with tutorial; gromacs.org_gmx-users Digest, Vol 168, Issue 101 Adarsh V. K.
[gmx-users] phosphotyrosine peptide farial tavakoli
[gmx-users] DNA strands are separated spss4 at iacs.res.in
[gmx-users] Fwd: DNA strands are separated spss4 at iacs.res.in
[gmx-users] DNA strands are separated Peter Stern
[gmx-users] DNA strands are separated spss4 at iacs.res.in
[gmx-users] Coulomb-14 Energy zaved at tezu.ernet.in
[gmx-users] Atomtype HC not found Giordano Perini
[gmx-users] request mmahmoudig at razi.tums.ac.ir
[gmx-users] request mmahmoudig at razi.tums.ac.ir
[gmx-users] request mmahmoudig at razi.tums.ac.ir
[gmx-users] C-formats of forcefield file sections Krzysztof Kolman
[gmx-users] Coulomb-14 Energy Mark Abraham
[gmx-users] Coulomb-14 Energy Mark Abraham
[gmx-users] request Mark Abraham
[gmx-users] request Mark Abraham
[gmx-users] Atomtype HC not found Mark Abraham
[gmx-users] water molecules crashing system Shayna Hilburg
[gmx-users] gmx traj output Justin Lemkul
[gmx-users] Gromacs 2018.1 Errors while working with tutorial; gromacs.org_gmx-users Digest, Vol 168, Issue 101 Justin Lemkul
[gmx-users] Coulomb-14 Energy David van der Spoel
[gmx-users] CG of molecule in water Alex
[gmx-users] Force Fields Momin Ahmad
[gmx-users] Force Fields Mark Abraham
[gmx-users] CG of molecule in water Mark Abraham
[gmx-users] Force Fields Momin Ahmad
[gmx-users] Force Fields Mark Abraham
[gmx-users] Topology file for amino acid rose rahmani
[gmx-users] Consult ÁLVARO RODRIGO RUIZ FERNÁNDEZ
[gmx-users] gmx traj output Mohsen Ramezanpour
[gmx-users] tilt angle between the axis of a protein normal to the membrane Alex Mathew
[gmx-users] Units within Packaged OPLS Force Field File (ffbonded.itp) Matthew Howenstine
[gmx-users] Are multiquestion mails acceptable? Daniel Brendle
[gmx-users] Units within Packaged OPLS Force Field File (ffbonded.itp) Justin Lemkul
[gmx-users] Are multiquestion mails acceptable? Justin Lemkul
[gmx-users] Problems with implementation of tabulated potentials of Buckingham function Diego Andres Henao Gonzalez
[gmx-users] Units within Packaged OPLS Force Field File (ffbonded.itp) Matthew Howenstine
[gmx-users] strange GPU load distribution Alex
[gmx-users] Gromacs 2018.1 Errors while working with tutorial; gromacs.org_gmx-users Digest, Vol 168, Issue 108 Adarsh V. K.
[gmx-users] Gromacs 2018.1 Errors while working with tutorial; gromacs.org_gmx-users Digest, Vol 168, Issue 108 Mark Abraham
[gmx-users] Equilibration step in MD SHYANTANI MAITI
[gmx-users] Coulomb-14 Energy zaved at tezu.ernet.in
[gmx-users] Two pair_styles for same atomtypes Sudip Das
[gmx-users] strange GPU load distribution Szilárd Páll
[gmx-users] Box size to be considered in editconf SHYANTANI MAITI
[gmx-users] strange GPU load distribution Alex
[gmx-users] strange GPU load distribution Mark Abraham
[gmx-users] Box size to be considered in editconf Justin Lemkul
[gmx-users] strange GPU load distribution Alex
[gmx-users] strange GPU load distribution Alex
[gmx-users] strange GPU load distribution Mark Abraham
[gmx-users] strange GPU load distribution Alex
[gmx-users] strange GPU load distribution Mark Abraham
[gmx-users] strange GPU load distribution Alex
[gmx-users] Force fields Alex
[gmx-users] Domain decomposition error with -rerun Sahithya S Iyer
[gmx-users] Domain decomposition error with -rerun RAHUL SURESH
[gmx-users] Domain decomposition error with -rerun Sahithya S Iyer
[gmx-users] Domain decomposition error with -rerun RAHUL SURESH
[gmx-users] Dihedral parameters from QM and MM relaxed surface scans Eric Smoll
[gmx-users] Domain decomposition error with -rerun Sahithya S Iyer
[gmx-users] Domain decomposition error with -rerun Mark Abraham
[gmx-users] Domain decomposition error with -rerun Sahithya S Iyer
[gmx-users] Domain decomposition error with -rerun Nikhil Maroli
[gmx-users] Force fields Alex
[gmx-users] structure factor Jo
[gmx-users] Force fields Mark Abraham
[gmx-users] Dihedral parameters from QM and MM relaxed surface scans Mark Abraham
[gmx-users] Dihedral parameters from QM and MM relaxed surface scans Eric Smoll
[gmx-users] Dihedral parameters from QM and MM relaxed surface scans Justin Lemkul
[gmx-users] Dihedral parameters from QM and MM relaxed surface scans Eric Smoll
[gmx-users] Dihedral parameters from QM and MM relaxed surface scans Justin Lemkul
[gmx-users] Heme topology Ragothaman Yennamalli
[gmx-users] Heme topology Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 167, Issue 139 SHYANTANI MAITI
[gmx-users] strange GPU load distribution Alex
[gmx-users] Protein-protein complex regarding RAHUL SURESH
[gmx-users] Protein-protein complex regarding Justin Lemkul

Last message date: Mon Apr 30 23:03:17 CEST 2018
Archived on: Mon Apr 30 23:03:19 CEST 2018

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