[gmx-users] Fixing dssp images using m2p file

Justin Lemkul jalemkul at vt.edu
Wed Apr 4 14:32:17 CEST 2018

On 4/4/18 2:52 AM, Alex Mathew wrote:
> Dear Gromacs experts,
> Which option i need to use to correct the dssp image as given in the link.
> (i have to get full part upto 100 ns  in the box)
> You can see the right side is not full in the box, i marked in the black box
> https://drive.google.com/file/d/1QkpFOLvOcrSyv1U6HkRorYrKgKxGCskS/view?usp=sharing

Change xbox and/or ybox to adjust the ratio between the two, so that you 
compress x relative to y.



Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129


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