[gmx-users] Fixing dssp images using m2p file

Justin Lemkul jalemkul at vt.edu
Wed Apr 4 14:32:17 CEST 2018



On 4/4/18 2:52 AM, Alex Mathew wrote:
> Dear Gromacs experts,
>
> Which option i need to use to correct the dssp image as given in the link.
> (i have to get full part upto 100 ns  in the box)
>
> You can see the right side is not full in the box, i marked in the black box
>
>
> https://drive.google.com/file/d/1QkpFOLvOcrSyv1U6HkRorYrKgKxGCskS/view?usp=sharing

Change xbox and/or ybox to adjust the ratio between the two, so that you 
compress x relative to y.

-Justin

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Justin A. Lemkul, Ph.D.
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Virginia Tech Department of Biochemistry

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