[gmx-users] High pressure in coarse-grained parametrization
Alex
alexanderwien2k at gmail.com
Sat Apr 7 04:13:30 CEST 2018
Dear all,
Here is a part of the *.mdp file I am using in coarse-grained
parametrization (Iterative Boltzmann Inversion method) of a molecule by
votca.
integrator = sd
tinit = 0
dt = 0.00002
nsteps = 50000000
init_step = 0
...
*tcoupl = no*
tc-grps = System
tau_t = 0.02
*ref_t = 298.15*
*Pcoupl = no*
pcoupltype = isotropic
tau_p = 0.5
compressibility = 4.5e-5
*ref_p = 1.0*
gen_vel = yes
gen_temp = 298.15
gen_seed = -1
The temperature is fully fine in each step of IBI, but the pressure is such
as below in the second step (it is twice in the first step IBI):
Energy Average Err.Est. RMSD Tot-Drift
-------------------------------------------------------------------------------
Pressure 1143.92 14 2686.58 -67.2573 (bar)
I was wondering if it is normal as I am using sd integrator? If not, what
can I do to make it normal?
Thank you.
Regards,
Alex
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