[gmx-users] md simulation of circular rna

Viveca Lindahl vivecalindahl at gmail.com
Sun Apr 15 10:31:20 CEST 2018


Hi,

There is no direct support for generating the periodic topology in pdb2gmx,
so that would require manually editing the topology/configurations of the
end resiudes to connect them.

--
Viveca


On Sun, Apr 15, 2018 at 7:34 AM, Atila Petrosian <atila.petrosian at gmail.com>
wrote:

>  Dear all,
>
> Can I do md simulation of circular rna using gromacs?
>
> Best regards,
> Atila
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