[gmx-users] DNA strands are separated

spss4 at iacs.res.in spss4 at iacs.res.in
Tue Apr 24 08:37:47 CEST 2018

Hii all
I am trying to do DNA simulation in water. I have done 200ns mdrun for
that. When I am trying to see the snapshot of different frames in VMD, it
shows that DNA strands are separated and one strand is out of the box. So I
couldn't get the picture of different frames with actual solvent
orientation around the DNA. How to solve this problem?


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