[gmx-users] DNA strands are separated

[spss4 at iacs.res.in]

Hii all
I am trying to do DNA simulation in water. I have done 200ns mdrun for
that. When I am trying to see the snapshot of different frames in VMD, it
shows that DNA strands are separated and one strand is out of the box. So I
couldn't get the picture of different frames with actual solvent
orientation around the DNA. How to solve this problem?

Thanks
sunipa