[gmx-users] Make errors 2019rc1

Raymond Arter raymondarter at gmail.com
Fri Dec 14 18:26:56 CET 2018


Hi,

I'm seeing the following errors at the end of the make step:

[100%] Linking CXX executable ../../bin/template
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_destroy(gmx_fft*)'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_init_1d(gmx_fft**, int, int)'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_init_1d_real(gmx_fft**, int, int)'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_2d_real(gmx_fft*, gmx_fft_direction, void*,
void*)'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_init_2d_real(gmx_fft**, int, int, int)'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_1d(gmx_fft*, gmx_fft_direction, void*,
void*)'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_cleanup()'
/opt/apps/general/binutils/2.31/bin/ld: ../../lib/libgromacs.so.4.0.0:
undefined reference to `gmx_fft_1d_real(gmx_fft*, gmx_fft_direction, void*,
void*)'
collect2: error: ld returned 1 exit status
make[2]: *** [bin/template] Error 1
make[1]: *** [share/template/CMakeFiles/template.dir/all] Error 2
make: *** [all] Error 2

I'm compiling Gromacs in the same way as 2019beta2 and 3, and I didn't see
these errors.
Am I making a silly mistake or is it something else?

Regards.


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