December 2018 Archives by subject

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Starting: Sat Dec 1 02:53:28 CET 2018
Ending: Mon Dec 31 18:46:54 CET 2018
Messages: 260

[gmx-users] (no subject) Soham Sarkar
[gmx-users] (no subject) Justin Lemkul
[gmx-users] (no subject) maya nair
[gmx-users] (no subject) Ahmedmmed Mohammed
[gmx-users] [ implicit_genborn_params ] for Gromos54a7 FF Alex
[gmx-users] [ implicit_genborn_params ] for Gromos54a7 FF David van der Spoel
[gmx-users] [ implicit_genborn_params ] for Gromos54a7 FF Alex
[gmx-users] [ implicit_genborn_params ] for Gromos54a7 FF David van der Spoel
[gmx-users] About Plumed+Gromacs+MPI yong zhou
[gmx-users] About Plumed+Gromacs+MPI Justin Lemkul
[gmx-users] Alchemical Free energy of growing a cavity in water Braden Kelly
[gmx-users] Area compressibility modulus GMX John Whittaker
[gmx-users] Area compressibility modulus GMX paul buscemi
[gmx-users] Auto-correlation function of transition dipole moment of chromophore and average density of chromophore around protein Mayank Dixit
[gmx-users] bonded interaction larger than cutoff Quyen Vu Van
[gmx-users] bonded interaction larger than cutoff Justin Lemkul
[gmx-users] bonded interaction larger than cutoff Quyen Vu Van
[gmx-users] Buckingham potential Mohammadiarani, Hossein
[gmx-users] Calculating Contact Surface Area in one Graph Sebastian Muraru
[gmx-users] Calculating Contact Surface Area in one Graph Justin Lemkul
[gmx-users] connectivity issue antonia vyrkou
[gmx-users] connectivity issue Fitsiou, Eleni
[gmx-users] connectivity issue antonia vyrkou
[gmx-users] connectivity issue Fitsiou, Eleni
[gmx-users] contact analysis between the all backbone of same protein SHAHEE ISLAM
[gmx-users] contact analysis between the all backbone of same protein soumadwip ghosh
[gmx-users] contact analysis between the all backbone of same protein SHAHEE ISLAM
[gmx-users] contact analysis between the all backbone of same protein SHAHEE ISLAM
[gmx-users] contact analysis between the all backbone of same protein Peter Kroon
[gmx-users] contact analysis between the all backbone of same protein Peter Kroon
[gmx-users] contact analysis within the all backbone of a protein SHAHEE ISLAM
[gmx-users] contact analysis within the all backbone of a protein SHAHEE ISLAM
[gmx-users] contacts Yasser Almeida Hernández
[gmx-users] damping coefficient in the Langevin thermostat ? Nikhil Maroli
[gmx-users] damping coefficient in the Langevin thermostat ? Mark Abraham
[gmx-users] Discarded angle between 3 virtual sites Jonathan Barnoud
[gmx-users] Does adding artificial mass cause problems for friction studies? James
[gmx-users] Does adding artificial mass cause problems for friction studies? Dallas Warren
[gmx-users] Domain decomposition and large molecules Tommaso D'Agostino
[gmx-users] Domain decomposition and large molecules Mark Abraham
[gmx-users] Domain decomposition and large molecules Tommaso D'Agostino
[gmx-users] doubt regarding order parameter calculated by gmx chi S2max and S2min Dr Tushar Ranjan Moharana
[gmx-users] doubt regarding order parameter calculated by gmx chi S2max and S2min Dr Tushar Ranjan Moharana
[gmx-users] doubt regarding order parameter calculated by gmx chi S2max and S2min Mario Andres Rodriguez Pineda
[gmx-users] download GROMOS54a6oxy Dr Tushar Ranjan Moharana
[gmx-users] download GROMOS54a6oxy Patrick Fuchs
[gmx-users] duplicated position restraint statements Alex
[gmx-users] duplicated position restraint statements Alex
[gmx-users] duplicated position restraint statements Justin Lemkul
[gmx-users] duplicated position restraint statements Alex
[gmx-users] electrostatic and LJ energy spss4 at iacs.res.in
[gmx-users] electrostatic and LJ energy Dr Tushar Ranjan Moharana
[gmx-users] electrostatic and LJ energy spss4 at iacs.res.in
[gmx-users] Epsilon_r Shan Jayasinghe
[gmx-users] Epsilon_r Justin Lemkul
[gmx-users] Epsilon_r Shan Jayasinghe
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi Justin Lemkul
[gmx-users] error on opening gmx_mpi paul buscemi
[gmx-users] error on opening gmx_mpi Shi Li
[gmx-users] error on opening gmx_mpi paul buscemi
[gmx-users] error on opening gmx_mpi Shi Li
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi Justin Lemkul
[gmx-users] error on opening gmx_mpi pbuscemi at q.com
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi p buscemi
[gmx-users] error on opening gmx_mpi paul buscemi
[gmx-users] Fixing the molecule in the centre of the micelle Jochen Hub
[gmx-users] Freezing Spherical Nanoparticle zaved at tezu.ernet.in
[gmx-users] Fwd: Soham Sarkar
[gmx-users] Getting more detail than is in the documentation James
[gmx-users] Getting more detail than is in the documentation Dallas Warren
[gmx-users] Getting more detail than is in the documentation James
[gmx-users] Glycine zwitterion parameters in Amber FF Justin Lemkul
[gmx-users] Gmx distance Dallas Warren
[gmx-users] Gmx gangle rose rahmani
[gmx-users] Gmx gangle Mark Abraham
[gmx-users] Gmx gangle rose rahmani
[gmx-users] Gmx gangle rose rahmani
[gmx-users] Gmx gangle Justin Lemkul
[gmx-users] Gmx gangle (Shi Li) Li, Shi
[gmx-users] Gmx mindist rose rahmani
[gmx-users] Gmx mindist rose rahmani
[gmx-users] gmx select with coordinates Shan Jayasinghe
[gmx-users] gromacs 2018 with OpenMPI + OpenMP Deepak Porwal
[gmx-users] gromacs 2018 with OpenMPI + OpenMP Szilárd Páll
[gmx-users] gromacs 2018 with OpenMPI + OpenMP Szilárd Páll
[gmx-users] gromacs 2018 with OpenMPI + OpenMP Deepak Porwal
[gmx-users] gromacs 2018 with OpenMPI + OpenMP Szilárd Páll
[gmx-users] gromacs 2018 with OpenMPI + OpenMP Szilárd Páll
[gmx-users] GROMACS 2019 official release Paul bauer
[gmx-users] GROMACS 2019 release candidate Paul bauer
[gmx-users] gromacs.org_gmx-users Digest, Vol 176, Issue 11 Seketoulie Keretsu
[gmx-users] grompp Overriding bond parameters and Proper Dih. parameters Sajad Ahrari
[gmx-users] Heavyh for ligand Bakary N'tji Diallo
[gmx-users] Help w.r.t enhancing the node performance for simulation Prasanth G, Research Scholar
[gmx-users] Help w.r.t enhancing the node performance for simulation Prasanth G, Research Scholar
[gmx-users] Help with respect to processing protein with FE2+ Prasanth G, Research Scholar
[gmx-users] Help with respect to processing protein with FE2+ Justin Lemkul
[gmx-users] How restrain the end-to-end distance in simulation? Mehdi Bagherpour
[gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File? Mehdi Mirzaie
[gmx-users] How To Calculate The Energy From The Coordinates Of Pdb File? Braden Kelly
[gmx-users] How to get pressure in a specific area of a system？ Frank
[gmx-users] How to install a new force-field? ZHANG Cheng
[gmx-users] How to install a new force-field? Justin Lemkul
[gmx-users] How to install a new force-field? ZHANG Cheng
[gmx-users] How to install a new force-field? Justin Lemkul
[gmx-users] How to install a new force-field? ZHANG Cheng
[gmx-users] How to install a new force-field? ZHANG Cheng
[gmx-users] How to install a new force-field? Peter Stern
[gmx-users] How to install a new force-field? Justin Lemkul
[gmx-users] How to perform RAMD in gromacs -reg venkat
[gmx-users] how to restart a job in grmacs SHAHEE ISLAM
[gmx-users] how to restart a job in grmacs spss4 at iacs.res.in
[gmx-users] how to restart a job in grmacs SHAHEE ISLAM
[gmx-users] how to restart a job in grmacs spss4 at iacs.res.in
[gmx-users] how to restart a job in grmacs SHAHEE ISLAM
[gmx-users] how to restart a job in grmacs spss4 at iacs.res.in
[gmx-users] how to restart a job in grmacs SHAHEE ISLAM
[gmx-users] how to restart a job in grmacs SHAHEE ISLAM
[gmx-users] hydrophobic interactions Andrew Bostick
[gmx-users] hydrophobic interactions Sudip Das
[gmx-users] hydrophobic interactions Andrew Bostick
[gmx-users] Impromised X-mas developer conference 1h earlier tomorrow? Erik Lindahl
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Jaime Sierra
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Szilárd Páll
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Jaime Sierra
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Mark Abraham
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Gmail
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Szilárd Páll
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Jaime Sierra
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Szilárd Páll
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Jaime Sierra
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Szilárd Páll
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Jaime Sierra
[gmx-users] Install GROMACS 2018 with CUDA features in dynamic linking way Szilárd Páll
[gmx-users] Install Gromacs from Debian/Ubuntu repository vs build from source Zhang Shenqiu
[gmx-users] Install Gromacs from Debian/Ubuntu repository vs build from source Justin Lemkul
[gmx-users] Install Gromacs from Debian/Ubuntu repository vs build from source paul buscemi
[gmx-users] Interaction energy, vdW and electrostatic daniel madulu shadrack
[gmx-users] Interaction energy, vdW and electrostatic Justin Lemkul
[gmx-users] is acpype compatible with amber 2018?? parmchk2 and not parmchk available Seketoulie Keretsu
[gmx-users] Local stress tensors Ali Khodayari
[gmx-users] Make errors 2019rc1 Raymond Arter
[gmx-users] Make errors 2019rc1 Paul Bauer
[gmx-users] Make errors 2019rc1 Raymond Arter
[gmx-users] Make errors 2019rc1 Paul bauer
[gmx-users] mdrun-adjusted cutoffs?! Alex
[gmx-users] mdrun-adjusted cutoffs?! Mark Abraham
[gmx-users] mdrun-adjusted cutoffs?! Alex
[gmx-users] mdrun-adjusted cutoffs?! Mark Abraham
[gmx-users] mdrun-adjusted cutoffs?! Alex
[gmx-users] mdrun-adjusted cutoffs?! Mark Abraham
[gmx-users] mdrun-adjusted cutoffs?! Alex
[gmx-users] mdrun-adjusted cutoffs?! Mark Abraham
[gmx-users] mdrun-adjusted cutoffs?! Alex
[gmx-users] mdrun-adjusted cutoffs?! Szilárd Páll
[gmx-users] mdrun-adjusted cutoffs?! Mark Abraham
[gmx-users] mdrun-adjusted cutoffs?! Alex
[gmx-users] mdrun-adjusted cutoffs?! Mark Abraham
[gmx-users] mdrun-adjusted cutoffs?! Szilárd Páll
[gmx-users] Mean square displacement on Log-Log plot? David van der Spoel
[gmx-users] Mean square displacement on Log-Log plot? Kevin Boyd
[gmx-users] Mean square displacement on Log-Log plot? David van der Spoel
[gmx-users] MSD close to a surface/layer Tuanan Lourenço
[gmx-users] MSD close to a surface/slab Tuanan Lourenço
[gmx-users] nano dimensions Vidya R
[gmx-users] nano dimensions Justin Lemkul
[gmx-users] nano dimensions Vidya R
[gmx-users] nano dimensions Justin Lemkul
[gmx-users] numpy related problem in GROMACS protein-ligand file preperation Seketoulie Keretsu
[gmx-users] numpy related problem in GROMACS protein-ligand file preperation Benson Muite
[gmx-users] numpy related problem in GROMACS protein-ligand file preperation Benson Muite
[gmx-users] Phosphorylation Atom Parameters in Implicit Water 唐文勤
[gmx-users] Please explain why this article has been accepted milad bagheri
[gmx-users] Please explain why this article has been accepted Benson Muite
[gmx-users] Please explain why this article has been accepted Justin Lemkul
[gmx-users] PME and solvation free energy for individual ions Oliver Beckstein
[gmx-users] PME and solvation free energy for individual ions Eric Smoll
[gmx-users] Position restraints while performing pulling run for Umbrella sampling ARNAB MUKHERJEE
[gmx-users] Position restraints while performing pulling run for Umbrella sampling ARNAB MUKHERJEE
[gmx-users] Position restraints while performing pulling run for Umbrella sampling ARNAB MUKHERJEE
[gmx-users] Pressure annealing? Javier Luque Di Salvo
[gmx-users] problem with introducing a new structure in gromacs, please help if anybody knows banijamali_fs
[gmx-users] problem with introducing a new structure in gromacs, please help if anybody knows Dallas Warren
[gmx-users] problems with running gmx do_dssp Dr. Puspita Halder
[gmx-users] Procedure for processing docked complex from Autodock vina Prasanth G, Research Scholar
[gmx-users] Protein-ligand complex simulation and ATBserver file Sri Prasanth Ghanta, Doctoral Research Scholar, Biosciences, SSSIHL
[gmx-users] Protein-ligand complex simulation and ATBserver file Justin Lemkul
[gmx-users] Protein-ligand complex simulation and ATBserver file Prasanth G, Research Scholar
[gmx-users] Protein-ligand complex simulation and ATBserver file Justin Lemkul
[gmx-users] Protein-ligand complex simulation and ATBserver file Prasanth G, Research Scholar
[gmx-users] Protein-ligand complex simulation and ATBserver file Justin Lemkul
[gmx-users] Pure-liquid MD Simulations Shan Jayasinghe
[gmx-users] Question on gmx editconf, pbc and NPT (Sebastian Muraru) Sebastian Muraru
[gmx-users] Question on gmx editconf, pbc and NPT Sebastian Muraru
[gmx-users] Question on pressure coupling Mohsen Ramezanpour
[gmx-users] RDF in a droplet Alex
[gmx-users] Regarding trjconv Ali Khodayari
[gmx-users] Regarding trjconv Justin Lemkul
[gmx-users] Regarding trjconv Ali Khodayari
[gmx-users] Residue DAN always renamed to DNA Dallas Warren
[gmx-users] Residue DAN always renamed to DNA Justin Lemkul
[gmx-users] Residue DAN always renamed to DNA Dallas Warren
[gmx-users] Residue DAN always renamed to DNA Dallas Warren
[gmx-users] Response required molashahimaryam at aut.ac.ir
[gmx-users] Response required Smith, Micholas D.
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Kevin Boyd
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Justin Lemkul
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Justin Lemkul
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Justin Lemkul
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Justin Lemkul
[gmx-users] Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] Running simulation differences Justin Lemkul
[gmx-users] RV: Running simulation differences Gonzalez Fernandez, Cristina
[gmx-users] scale interactions between two groups of atoms Deng, Nanjie
[gmx-users] Side chains protein interaction: determine the type of interaction of two amino acids at the atomic level milad bagheri
[gmx-users] Simulation Across Mulitple Nodes with GPUs and PME Zachary Wehrspan
[gmx-users] Simulation Across Mulitple Nodes with GPUs and PME Kutzner, Carsten
[gmx-users] Surface Energy calculation of polymeric materials Maria Luisa
[gmx-users] Surface Energy calculation of polymeric materials David van der Spoel
[gmx-users] Surface Energy calculation of polymeric materials paul buscemi
[gmx-users] the aggregation of a peptide using gromacs marzieh dehghan
[gmx-users] the aggregation of a peptide using gromacs Mark Abraham
[gmx-users] Umbrella sampling, choice of number of windows Nawel Mele
[gmx-users] User Specified non-bonded potentials- error Raj kamal
[gmx-users] User Specified non-bonded potentials- error Mark Abraham
[gmx-users] using dual CPU's paul buscemi
[gmx-users] using dual CPU's Mark Abraham
[gmx-users] using dual CPU's p buscemi
[gmx-users] using dual CPU's Mark Abraham
[gmx-users] using dual CPU's paul buscemi
[gmx-users] using dual CPU's paul buscemi
[gmx-users] using dual CPU's Szilárd Páll
[gmx-users] using dual CPU's paul buscemi
[gmx-users] using dual CPU's Mark Abraham
[gmx-users] using dual CPU's pbuscemi at q.com
[gmx-users] using dual CPU's Kutzner, Carsten
[gmx-users] using dual CPU's paul buscemi
[gmx-users] using dual CPU's Kutzner, Carsten
[gmx-users] using dual CPU's p buscemi
[gmx-users] using dual CPU's pbuscemi at q.com
[gmx-users] using dual CPU's pbuscemi at q.com
[gmx-users] using dual CPU's Kutzner, Carsten
[gmx-users] using dual CPU's Szilárd Páll
[gmx-users] using dual CPU's Szilárd Páll
[gmx-users] using dual CPU's pbuscemi at q.com
[gmx-users] Volume Contraction Issue tca1
[gmx-users] Why charge parameter of cations like Cu2+, Zn2+ in GROMOS 54a7 force field in GROMACS equals to zero? ABEL Stephane
[gmx-users] Why charge parameter of cations like Cu2+, Zn2+ in GROMOS 54a7 force field in GROMACS equals to zero? Chenlin Lu

Last message date: Mon Dec 31 18:46:54 CET 2018
Archived on: Mon Dec 31 18:46:55 CET 2018

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