[gmx-users] Gmx mindist

rose rahmani rose.rhmn93 at gmail.com
Mon Dec 31 00:58:12 CET 2018

Also i have used this command

G_mindist -f md2.gro -s -n -or (select Pr-H and tube)

Dies it calculate minimum distabce of non-hydrogen atom of each residue
with tube closest atom or COM of nanotube?

On Mon, 31 Dec 2018, 03:03 rose rahmani <rose.rhmn93 at gmail.com wrote:

> Hi,
> Does g_mindist calculates distances between COM of two groups?
> I want twi calculate dustances between any atom of protein-H and nanotube
> surface. So if g_mindist shows for example 0.9nm is it really 0.9-0.7(tube
> radius)=0.2 nm from surface?
> Best

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