[gmx-users] Secondary structure propensity.
subhomoy.bk at gmail.com
Fri Feb 16 09:40:49 CET 2018
I believe *do_dssp* will do the trick. Generate the *.xpm* matrix file , it
contains the required information.
On Fri, Feb 16, 2018 at 1:30 PM, Sundari <sundi6170 at gmail.com> wrote:
> Dear gromacs users,
> can any one please tell me that how we get the secondary structure
> propensity or secondary structure content(%) as a function of simulation
> I used "gmx do_dssp" but it gives me number of residues forming the
> secondary structure vs simulation time. is it same thing or something
> Thank you in advance..
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*Dr. Subhomoi Borkotoky, Ph. D.*
DBT Research Associate,
Kusuma School of Biological Sciences,
Indian Institute of Technology Delhi,
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