[gmx-users] Calculate RDF within a certain distance from atom

[Mahsa E]

Hi,

I think the selection keywords in the manual are helpful:

http://manual.gromacs.org/documentation/5.1/onlinehelp/selections.html#selection-examples

/Mahsa


On Tue, Feb 20, 2018 at 5:53 PM, Dilip H N <cy16f01.dilip at nitk.edu.in>
wrote:

> Hello,
> How to get RDF within a certain distance..??
>
> Say for eg., i have glycine amino-acid and i want the RDF of Oxygen water
> atoms within 0.7nm of C-alpha (Calpha-Ow).
>
> how can i get it from in-house gmx rdf command...??
>
> Any suggestions are appreciated...
>
> Thank you.
>
>
> --
> With Best Regards,
>
> DILIP.H.N
> Ph.D. Student
>
>
>
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