[gmx-users] 4096 characters

Justin Lemkul jalemkul at vt.edu
Tue Jan 2 13:04:47 CET 2018

On 1/2/18 3:36 AM, Negar Parvizi wrote:
> Dear all users,
> I have a question about characters.I want to simulate protein-ligand complex from Justin Lmkul tutorial .When I run this line:gmx editconf -f complex.gro -o newbox.gro -bt dodecahedron -d 1.0I get this error:"Fatal error:An input file contains a line longer than 4096 characters while the buffer passed to fgets2 has size 4096. The line starts with:'  "
>   I would be appreciated if you can help me on solving this problem.

Likely you edited a file with a non-plain text editor and got malformed 
line endings. Maybe try dos2unix or otherwise start over and only use 
proper editors like vim or emacs.



Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129


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