[gmx-users] 4096 characters

[Justin Lemkul]

On 1/2/18 3:36 AM, Negar Parvizi wrote:
> Dear all users,
> I have a question about characters.I want to simulate protein-ligand complex from Justin Lmkul tutorial .When I run this line:gmx editconf -f complex.gro -o newbox.gro -bt dodecahedron -d 1.0I get this error:"Fatal error:An input file contains a line longer than 4096 characters while the buffer passed to fgets2 has size 4096. The line starts with:'  "
>   I would be appreciated if you can help me on solving this problem.

Likely you edited a file with a non-plain text editor and got malformed 
line endings. Maybe try dos2unix or otherwise start over and only use 
proper editors like vim or emacs.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Assistant Professor
Virginia Tech Department of Biochemistry

303 Engel Hall
340 West Campus Dr.
Blacksburg, VA 24061

jalemkul at vt.edu | (540) 231-3129
http://www.biochem.vt.edu/people/faculty/JustinLemkul.html

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