January 2018 Archives by subject

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Starting: Mon Jan 1 06:52:42 CET 2018
Ending: Wed Jan 31 18:44:21 CET 2018
Messages: 620

[gmx-users] (no subject) Rakesh Mishra
[gmx-users] (no subject) Rakesh Mishra
[gmx-users] (no subject) Justin Lemkul
[gmx-users] (no subject) Vytautas Rakeviius
[gmx-users] (no subject) Vytautas Rakeviius
[gmx-users] (no subject) Rakesh Mishra
[gmx-users] (no subject) Sankaran SV .
[gmx-users] (no subject) Alex
[gmx-users] (no subject) jamesmkrieger at gmail.com
[gmx-users] (no subject) João Henriques
[gmx-users] (no subject) negar habibzadeh
[gmx-users] (no subject) حلیمه میرسالاری
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) Mark Abraham
[gmx-users] (no subject) alex rayevsky
[gmx-users] (no subject) RAHUL SURESH
[gmx-users] (no subject) RAHUL SURESH
[gmx-users] -inter command zaved at tezu.ernet.in
[gmx-users] -inter command João Henriques
[gmx-users] -inter command João Henriques
[gmx-users] -inter command zaved at tezu.ernet.in
[gmx-users] -inter command Justin Lemkul
[gmx-users] -inter command zaved at tezu.ernet.in
[gmx-users] -inter command Justin Lemkul
[gmx-users] -inter command zaved at tezu.ernet.in
[gmx-users] -inter command Justin Lemkul
[gmx-users] 1st CfP: 4th Symposium on Big Data Visual and Immersive Analytics (BDVA): 17.-19.10.2018 Konstanz Björn Sommer
[gmx-users] 2016.3 only gmx grompp error on NVT step for ions Sarai G
[gmx-users] 2016.3 only gmx grompp error on NVT step for ions Mark Abraham
[gmx-users] 2016.3 only gmx grompp error on NVT step for ions Sarai G
[gmx-users] 2016.3 only gmx grompp error on NVT step for ions Justin Lemkul
[gmx-users] 4096 characters Negar Parvizi
[gmx-users] 4096 characters Justin Lemkul
[gmx-users] About extracting the non-bonded forces Lovuit CHEN
[gmx-users] About extracting the non-bonded forces Mark Abraham
[gmx-users] About extracting the non-bonded forces Mark Abraham
[gmx-users] Acetylation of lysine Shraddha Parate
[gmx-users] Acetylation of lysine Justin Lemkul
[gmx-users] Acetylation of lysine Shraddha Parate
[gmx-users] Acetylation of lysine Justin Lemkul
[gmx-users] Acetylation of lysine Shraddha Parate
[gmx-users] Acetylation of lysine Justin Lemkul
[gmx-users] Acetylation of lysine Shraddha Parate
[gmx-users] Acetylation of lysine Shraddha Parate
[gmx-users] Acetylation of lysine Shraddha Parate
[gmx-users] Acetylation of lysine Justin Lemkul
[gmx-users] Alignment algorithm Simone Bolognini
[gmx-users] Alignment algorithm Justin Lemkul
[gmx-users] Alternative for do_dssp for secondary structure analysis? ZHANG Cheng
[gmx-users] Alternative for do_dssp for secondary structure analysis? Justin Lemkul
[gmx-users] An conda package for installing gromacs 4.5.5 on 64-bit 蕭毅
[gmx-users] An conda package for installing gromacs 4.5.5 on 64-bit João Henriques
[gmx-users] An conda package for installing gromacs 4.5.5 on 64-bit linux system 蕭毅
[gmx-users] An conda package for installing gromacs 4.5.5 on 64-bit linux system James Krieger
[gmx-users] An conda package for installing gromacs 4.5.5 on 64-bit linux system João Henriques
[gmx-users] Analysis ahmed akinyeye
[gmx-users] Analysis Justin Lemkul
[gmx-users] Atom OT1 in the residue Мижээ Батсайхан
[gmx-users] Atom OT1 in the residue RAHUL SURESH
[gmx-users] Atom OT1 in the residue Мижээ Батсайхан
[gmx-users] Atom OT1 in the residue RAHUL SURESH
[gmx-users] Atom OT1 in the residue RAHUL SURESH
[gmx-users] Atom OT1 in the residue Justin Lemkul
[gmx-users] Atom OT1 in the residue Мижээ Батсайхан
[gmx-users] atom types consistency between atb and charmm MD
[gmx-users] atom types consistency between atb and charmm Justin Lemkul
[gmx-users] atom types consistency between atb and charmm MD
[gmx-users] atom types consistency between atb and charmm Justin Lemkul
[gmx-users] atom types consistency between atb and charmm MD
[gmx-users] auto-correlation time Netaly Khazanov
[gmx-users] auto-correlation time Mark Abraham
[gmx-users] auto-correlation time Netaly Khazanov
[gmx-users] Best method for equilibrating lipid system (Amber parameters) Crystal Vander Zanden
[gmx-users] calculation of surface tension kordzadeh at aut.ac.ir
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? ZHANG Cheng
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? Justin Lemkul
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? Justin Lemkul
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? Alexandr Nasedkin
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? Justin Lemkul
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? Justin Lemkul
[gmx-users] Can I get the fraction of solvent accessible surface area using "gmx sasa"? Justin Lemkul
[gmx-users] Cannot find position restraint file restraint.gro Sailesh Bataju
[gmx-users] Cannot find position restraint file restraint.gro Justin Lemkul
[gmx-users] Cannot find position restraint file restraint.gro Sailesh Bataju
[gmx-users] Cannot find position restraint file restraint.gro Justin Lemkul
[gmx-users] cannot flush logfile Neda Rafiee
[gmx-users] cannot flush logfile Justin Lemkul
[gmx-users] Catenation error suniba
[gmx-users] Catenation error Qinghua Liao
[gmx-users] Charges in alchemistry dgfd dgdfg
[gmx-users] Charges in alchemistry dgfd dgdfg
[gmx-users] citation for amb2gmx.pl, or acpypi.py Lara rajam
[gmx-users] clayff Shaofeng Wang
[gmx-users] clayff Sohaib. Mohammed
[gmx-users] clayff forcefield Shaofeng Wang
[gmx-users] Combination rules for VdW parameters with CHARMM36 forcefield Shrinath Kumar
[gmx-users] Compiling Gromacs 2018 using Intel 2018.1 compiler on OSX 10.13.3 Zhiyi Wu
[gmx-users] Compiling Gromacs 2018 using Intel 2018.1 compiler on OSX 10.13.3 Mark Abraham
[gmx-users] Compiling Gromacs 2018 using Intel 2018.1 compiler on OSX 10.13.3 Mark Abraham
[gmx-users] constant surface tension in gormacs Ali Shomali
[gmx-users] Converting top or tpr to psf jamesmkrieger at gmail.com
[gmx-users] Converting top or tpr to psf Justin Lemkul
[gmx-users] Converting top or tpr to psf jamesmkrieger at gmail.com
[gmx-users] Converting top or tpr to psf Justin Lemkul
[gmx-users] define terminal residue ? MD
[gmx-users] define terminal residue ? Justin Lemkul
[gmx-users] define terminal residue ? MD
[gmx-users] Defining single, double and triple bonds SUVANKAR GHOSH
[gmx-users] Defining single, double and triple bonds Mark Abraham
[gmx-users] Density profile of water rose rahmani
[gmx-users] Density profile of water Srinivasa Ramisetti
[gmx-users] Density profile of water rose rahmani
[gmx-users] dielectric constant along specific direction Iman Ahmadabadi
[gmx-users] dielectric constant along specific direction David van der Spoel
[gmx-users] difference between force constants in various force field kordzadeh at aut.ac.ir
[gmx-users] difference between force constants in various force field kordzadeh at aut.ac.ir
[gmx-users] difference between force constants in various force field Justin Lemkul
[gmx-users] dihedral not created even with ffbonded.itp all set MD
[gmx-users] dihedral not created even with ffbonded.itp all set Justin Lemkul
[gmx-users] dihedral not created even with ffbonded.itp all set MD
[gmx-users] dimensions of the box RAHUL SURESH
[gmx-users] dimensions of the box Nikhil Maroli
[gmx-users] dimensions of the box Justin Lemkul
[gmx-users] dimensions of the box RAHUL SURESH
[gmx-users] dimensions of the box RAHUL SURESH
[gmx-users] dimensions of the box Justin Lemkul
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss Justin Lemkul
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss Justin Lemkul
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss Justin Lemkul
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss Justin Lemkul
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss Justin Lemkul
[gmx-users] disulfide bond missing even with -ss MD
[gmx-users] disulfide bond missing even with -ss Justin Lemkul
[gmx-users] disulfide bond missing even with -ss ABEL Stephane
[gmx-users] Electric Field Ali Ahmed
[gmx-users] Electric Field Mark Abraham
[gmx-users] Electric Field Ali Ahmed
[gmx-users] Electron density using g_density Mohsen Ramezanpour
[gmx-users] Electron density using g_density Mohsen Ramezanpour
[gmx-users] Electron density using g_density Justin Lemkul
[gmx-users] Electron density using g_density Mohsen Ramezanpour
[gmx-users] Electron density using g_density Mohsen Ramezanpour
[gmx-users] Electron density using g_density Mohsen Ramezanpour
[gmx-users] emtol value Ahmed Mashaly
[gmx-users] emtol value Justin Lemkul
[gmx-users] energy group exclusion rose rahmani
[gmx-users] energy group exclusion Justin Lemkul
[gmx-users] energy group exclusion rose rahmani
[gmx-users] energy group exclusion Justin Lemkul
[gmx-users] energy minimization rose rahmani
[gmx-users] energy minimization Justin Lemkul
[gmx-users] energy minimization rose rahmani
[gmx-users] Error regarding pdb2gmx of modified residue Amir Zeb
[gmx-users] Error regarding pdb2gmx of modified residue Mark Abraham
[gmx-users] Error regarding pdb2gmx of modified residue Amir Zeb
[gmx-users] Error regarding pdb2gmx of modified residue Mark Abraham
[gmx-users] Error regarding pdb2gmx of modified residue Amir Zeb
[gmx-users] Error while compiling GROMACS 2018 Yongchul Chung
[gmx-users] Error while compiling GROMACS 2018 Paul Bauer
[gmx-users] Error while installing GROMACS-2018-rc1 Yongchul Chung
[gmx-users] Error while installing GROMACS-2018-rc1 Mark Abraham
[gmx-users] Error while installing GROMACS-2018-rc1 Yongchul Chung
[gmx-users] Error while installing GROMACS-2018-rc1 Yongchul Chung
[gmx-users] Error while installing GROMACS-2018-rc1 Mark Abraham
[gmx-users] Error while installing GROMACS-2018-rc1 Mark Abraham
[gmx-users] Errors while building with Cuda 9.0 Kevin Chen
[gmx-users] Errors while building with Cuda 9.0 Mark Abraham
[gmx-users] Errors while building with Cuda 9.0 Szilárd Páll
[gmx-users] extending simulations Myunggi Yi
[gmx-users] extending simulations Justin Lemkul
[gmx-users] extending simulations Myunggi Yi
[gmx-users] extending simulations Mark Abraham
[gmx-users] extending simulations Myunggi Yi
[gmx-users] extending simulations Myunggi Yi
[gmx-users] extending simulations Justin Lemkul
[gmx-users] extending simulations Jernej Zidar
[gmx-users] extending simulations Mark Abraham
[gmx-users] fep protocol for gromacs 2016 Yoav Atsmon-Raz
[gmx-users] fep protocol for gromacs 2016 asaffarhi at post.tau.ac.il
[gmx-users] fep protocol for gromacs 2016 Mark Abraham
[gmx-users] Force field informations Lara rajam
[gmx-users] Force field informations dgfd dgdfg
[gmx-users] Force field informations Mark Abraham
[gmx-users] force field parameters clashing Harsha Ravishankar
[gmx-users] force field parameters clashing Justin Lemkul
[gmx-users] force field parameters clashing Harsha Ravishankar
[gmx-users] force field parameters clashing Justin Lemkul
[gmx-users] Formula for 9-3 wall potential Jacob Alan Spooner
[gmx-users] Fwd: EULA clarification Erik Lindahl
[gmx-users] Fwd: two very basic questions on new parameters for gromos forcefield Pedro Deira
[gmx-users] Fwd: two very basic questions on new parameters for gromos forcefield Justin Lemkul
[gmx-users] g_order for all-atom simulations for double bonds Mohsen Ramezanpour
[gmx-users] g_order for all-atom simulations for double bonds Piggot T.
[gmx-users] gaff mmahmoudig at razi.tums.ac.ir
[gmx-users] gangle for a plane and z axis Mohsen Ramezanpour
[gmx-users] gangle for a plane and z axis Justin Lemkul
[gmx-users] generating movie file Vidya R
[gmx-users] generating movie file Alex
[gmx-users] generating movie file Vidya R
[gmx-users] generating movie file Justin Lemkul
[gmx-users] gmx dipole and gmx potential ali akgün
[gmx-users] gmx dipole and gmx potential David van der Spoel
[gmx-users] gmx distance rose rahmani
[gmx-users] gmx distance rose rahmani
[gmx-users] gmx distance Justin Lemkul
[gmx-users] gmx distance Nick Johans
[gmx-users] gmx distance Justin Lemkul
[gmx-users] gmx enenrgy kordzadeh at aut.ac.ir
[gmx-users] gmx enenrgy Justin Lemkul
[gmx-users] gmx enenrgy kordzadeh at aut.ac.ir
[gmx-users] gmx energy Moradzadeh, Alireza
[gmx-users] gmx velacc dgfd dgdfg
[gmx-users] gmx velacc Justin Lemkul
[gmx-users] Gnuplot x-axis range Represents Frames Rana Rehan Khalid
[gmx-users] GPU ECC question Kevin Chen
[gmx-users] GPU ECC question Mark Abraham
[gmx-users] Gromacs 2016.3 orte error while running on cluster Rainer Rutka
[gmx-users] Gromacs 2016.3 orte error while running on cluster Szilárd Páll
[gmx-users] Gromacs 2016.3 orte error while running on cluster Rainer Rutka
[gmx-users] GROMACS 2018 official release Mark Abraham
[gmx-users] gromacs development Tomislav Jurin
[gmx-users] GROMACS performance information Johanna K. S. Tiemann
[gmx-users] GROMACS-GPU enabled installation error Joydeep Munshi
[gmx-users] GROMACS-GPU enabled installation error David van der Spoel
[gmx-users] GROMACS-GPU enabled installation error Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 117 Sarai G
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 117 Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 42 Jernej Zidar
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 50 ABEL Stephane
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 50 Justin Lemkul
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 85 banijamali_fs
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 85 Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 85 Mark Abraham
[gmx-users] gromacs.org_gmx-users Digest, Vol 165, Issue 93 Bakary N'tji Diallo
[gmx-users] Grompp warning about topology constrains Ahmed Mashaly
[gmx-users] Grompp warning about topology constrains Justin Lemkul
[gmx-users] Grompp warning about topology constrains Ahmed Mashaly
[gmx-users] Grompp warning about topology constrains Justin Lemkul
[gmx-users] Grompp warning about topology constrains Ahmed Mashaly
[gmx-users] Heat capacity calculations from fluctuations and using g_dos Srinath Kompella
[gmx-users] Heat capacity calculations from fluctuations and using g_dos David van der Spoel
[gmx-users] Heat capacity calculations from fluctuations and using g_dos Srinath Kompella
[gmx-users] Heat capacity of the system Malvika K
[gmx-users] Heat capacity of the system Mark Abraham
[gmx-users] Heat capacity of the system Mark Abraham
[gmx-users] Heat capacity of the system Malvika K
[gmx-users] Heat capacity of the system Malvika K
[gmx-users] Help in stretching membrane Rajeswari A.
[gmx-users] help with my errors banijamali_fs
[gmx-users] help with my errors RAHUL SURESH
[gmx-users] help with my errors RAHUL SURESH
[gmx-users] help with my errors (RAHUL SURESH) banijamali_fs
[gmx-users] help with my errors (RAHUL SURESH) RAHUL SURESH
[gmx-users] help with my errors (RAHUL SURESH) RAHUL SURESH
[gmx-users] help with my errors (RAHUL SURESH) Justin Lemkul
[gmx-users] How to build a topology file of Gromacs for a system contains two graphene sheet? Mostafa Fakhraee
[gmx-users] How to build a topology file of Gromacs for a system contains two graphene sheet? Moradzadeh, Alireza
[gmx-users] How to convert charmm str to itp file? Мижээ Батсайхан
[gmx-users] How to convert charmm str to itp file? 金瑞涛
[gmx-users] How to convert charmm str to itp file? Justin Lemkul
[gmx-users] how to make index file for a complex which is composed of protein and a phosphotyrosine ligand farial tavakoli
[gmx-users] how to make index file for a complex which is composed of protein and a phosphotyrosine ligand Justin Lemkul
[gmx-users] How to modify Lorentz−Berthelot combining rules? Fariba Asadi
[gmx-users] How to modify Lorentz−Berthelot combining rules? David van der Spoel
[gmx-users] How to solve this fatal error? حلیمه میرسالاری
[gmx-users] How to solve this fatal error? Mark Abraham
[gmx-users] How to solve this fatal error? حلیمه میرسالاری
[gmx-users] How to solve this fatal error? حلیمه میرسالاری
[gmx-users] How to solve this fatal error? Mark Abraham
[gmx-users] How to solve this fatal error? Mark Abraham
[gmx-users] How to solve this fatal error? حلیمه میرسالاری
[gmx-users] huge center of mass distance mismatch in umbrella sampling Irem Altan
[gmx-users] huge center of mass distance mismatch in umbrella sampling Justin Lemkul
[gmx-users] huge center of mass distance mismatch in umbrella sampling Irem Altan
[gmx-users] huge center of mass distance mismatch in umbrella sampling Irem Altan
[gmx-users] huge center of mass distance mismatch in umbrella sampling Justin Lemkul
[gmx-users] hydration free energy dgfd dgdfg
[gmx-users] hydration free energy asaffarhi at post.tau.ac.il
[gmx-users] hydration free energy dgfd dgdfg
[gmx-users] hydration free energy dgfd dgdfg
[gmx-users] hydration free energy asaffarhi at post.tau.ac.il
[gmx-users] hydration free energy asaffarhi at post.tau.ac.il
[gmx-users] hydration free energy asaffarhi at post.tau.ac.il
[gmx-users] hydration free energy Wes Barnett
[gmx-users] hydration free energy dgfd dgdfg
[gmx-users] Hydrogen bonds for particular residue during simulations. Seera Suryanarayana
[gmx-users] Hydrogen bonds for particular residue during simulations. Justin Lemkul
[gmx-users] Info on umbrella sampling simulation Matteo Busato
[gmx-users] inter- and intra-molecular hbond analysis Mohsen Ramezanpour
[gmx-users] inter- and intra-molecular hbond analysis Mohsen Ramezanpour
[gmx-users] inter- and intra-molecular hbond analysis Mohsen Ramezanpour
[gmx-users] interaction force between Mg and Oxygens of phosphate, in CHARM36 force field Sajad Ahrari
[gmx-users] interaction force between Mg and Oxygens of phosphate, in CHARM36 force field Justin Lemkul
[gmx-users] Is there any difference with gromacs and other MD programs? 설진규 (자연과학부)
[gmx-users] Is there any difference with gromacs and other MD programs? Justin Lemkul
[gmx-users] Issue regarding MN+2 Amir Zeb
[gmx-users] KALP in DPPC kordzadeh at aut.ac.ir
[gmx-users] KALP in DPPC Justin Lemkul
[gmx-users] KALP in DPPC kordzadeh at aut.ac.ir
[gmx-users] KALP in DPPC Piggot T.
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC negar habibzadeh
[gmx-users] KALP15 in DPPC Justin Lemkul
[gmx-users] KALP15 in DPPC: Bilayer out of solvation box Seketoulie Keretsu
[gmx-users] KALP15 in DPPC: Bilayer out of solvation box Mark Abraham
[gmx-users] KALP15 in DPPC: Bilayer out of solvation box Justin Lemkul
[gmx-users] lambda value for free energy calculation kordzadeh at aut.ac.ir
[gmx-users] lambda value for free energy calculation dgfd dgdfg
[gmx-users] lambda value for free energy calculation Mark Abraham
[gmx-users] lambda value for free energy calculation kordzadeh at aut.ac.ir
[gmx-users] ligand itp file doesn't have dihedral angles that including H atom MD
[gmx-users] ligand itp file doesn't have dihedral angles that including H atom Mark Abraham
[gmx-users] lipid bilayer simulation-simulation setup Mohsen Ramezanpour
[gmx-users] MBAR bootstrap Thanh Le
[gmx-users] MBAR bootstrap Michael Shirts
[gmx-users] MDP define in GROMACS 2018 Joshua Mitchell
[gmx-users] MDP define in GROMACS 2018 Mark Abraham
[gmx-users] MDP define in GROMACS 2018 Mark Abraham
[gmx-users] MDrun rerun issue dodia
[gmx-users] MDrun rerun issue Mark Abraham
[gmx-users] MDrun rerun issue dodia
[gmx-users] Measurement of helical tilt (dimer tilt) using gmx helixorient Roshan Shrestha
[gmx-users] Minimization changes system box shape after using ParmEd Crystal Vander Zanden
[gmx-users] Minimization changes system box shape after using ParmEd Crystal Vander Zanden
[gmx-users] Minimization changes system box shape after using ParmEd Justin Lemkul
[gmx-users] Minimization error Ahmed Mashaly
[gmx-users] Minimization problem Neda Rafiee
[gmx-users] Minimization problem Mark Abraham
[gmx-users] MOVIE.pdb Neha Gupta
[gmx-users] MOVIE.pdb Justin Lemkul
[gmx-users] no residue type Nick Johans
[gmx-users] non water solvation mmahmoudig at razi.tums.ac.ir
[gmx-users] non water solvation Justin Lemkul
[gmx-users] NVML library in CUDA 9 & Gromacs 2018 Jernej Zidar
[gmx-users] NVML library in CUDA 9 & Gromacs 2018 Mark Abraham
[gmx-users] NVML library in CUDA 9 & Gromacs 2018 Mark Abraham
[gmx-users] OPLSAA and TOPOLBUILD, regarding RAHUL SURESH
[gmx-users] OPLSAA and TOPOLBUILD, regarding Justin Lemkul
[gmx-users] OPLSAA and TOPOLBUILD, regarding Ray, Bruce D
[gmx-users] Osmotic Pressure Calculations and fixed reference values Mandar Kulkarni
[gmx-users] Output velocities and forces for each step? Mohd Farid Ismail
[gmx-users] Output velocities and forces for each step? Shrinath Kumar
[gmx-users] Output velocities and forces for each step? Mohd Farid Ismail
[gmx-users] Output velocities and forces for each step? Mohd Farid Ismail
[gmx-users] Output velocities and forces for each step? Mohd Farid Ismail
[gmx-users] Output velocities and forces for each step? Justin Lemkul
[gmx-users] phi/psi Urszula Uciechowska
[gmx-users] phi/psi João Henriques
[gmx-users] phi/psi Zheng Ruan
[gmx-users] phosphotyrosine farial tavakoli
[gmx-users] Please provide some advice on my simulations vijayakumar gosu
[gmx-users] Please provide some advice on my simulations Mark Abraham
[gmx-users] Please provide some advice on my simulations Mark Abraham
[gmx-users] Position restraint on flexible models of water Iman Ahmadabadi
[gmx-users] Position restraint on flexible models of water Justin Lemkul
[gmx-users] Possibility of adding external forces to simulating molecules Lovuit CHEN
[gmx-users] Possibility of adding external forces to simulating molecules João Henriques
[gmx-users] Possible issues from a precision mismatch. Diego Alberto Muñoz Gacitua
[gmx-users] potential profile with PBC Alex
[gmx-users] potential profile with PBC Alex
[gmx-users] pressure coupling kordzadeh at aut.ac.ir
[gmx-users] pressure coupling Mark Abraham
[gmx-users] pressure coupling Mark Abraham
[gmx-users] pressure coupling kordzadeh at aut.ac.ir
[gmx-users] printf + trjcat Hector Martinez-Lopez
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff ABEL Stephane
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff Justin Lemkul
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff ABEL Stephane
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff Justin Lemkul
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff ABEL Stephane
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff ABEL Stephane
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff Justin Lemkul
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff -- Resolved ABEL Stephane
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff -- Resolved Justin Lemkul
[gmx-users] Problem fpr building a peptide with two modified residues with amber ff -- Resolved ABEL Stephane
[gmx-users] Questions on residue RMSF YanhuaOuyang
[gmx-users] RADIAL DISTRIBUTION FUNCTION Neha Gupta
[gmx-users] Recentering a protein Ahmed Mashaly
[gmx-users] regarding pbc issue Vidya R
[gmx-users] regarding pbc issue Justin Lemkul
[gmx-users] regarding pbc issue Vidya R
[gmx-users] regarding pbc issue Justin Lemkul
[gmx-users] regarding pbc issue Rose
[gmx-users] regarding pbc issue Justin Lemkul
[gmx-users] regarding pbc issue Rose
[gmx-users] regarding pbc issue Justin Lemkul
[gmx-users] regarding pbc issue Rose
[gmx-users] regarding pbc issue Justin Lemkul
[gmx-users] regarding rdf Neha Gupta
[gmx-users] Regarding simulation of ions-water system Dilip H N
[gmx-users] Regarding simulation of ions-water system Mark Abraham
[gmx-users] Regarding submitting a job in the cluster Dilip H N
[gmx-users] Regarding submitting a job in the cluster Justin Lemkul
[gmx-users] Related to REMD ISHRAT JAHAN
[gmx-users] Related to REMD Mark Abraham
[gmx-users] Related to REMD Mark Abraham
[gmx-users] Related to REMD Sudip Das
[gmx-users] Related to REMD ISHRAT JAHAN
[gmx-users] Related to REMD ISHRAT JAHAN
[gmx-users] Related to REMD Sudip Das
[gmx-users] Related to REMD ISHRAT JAHAN
[gmx-users] REMD implicit solvent Urszula Uciechowska
[gmx-users] REMD implicit solvent Mark Abraham
[gmx-users] REMD implicit solvent Mark Abraham
[gmx-users] REMD implicit solvent Urszula Uciechowska
[gmx-users] REMD implicit solvent Qinghua Liao
[gmx-users] REMD implicit solvent Urszula Uciechowska
[gmx-users] Replica exchange checkpoint error 金瑞涛
[gmx-users] Replica exchange checkpoint error Dhaniram Mahato
[gmx-users] Replica exchange checkpoint error Mark Abraham
[gmx-users] Replica exchange checkpoint error 金瑞涛
[gmx-users] Replica exchange checkpoint error 金瑞涛
[gmx-users] Replica exchange checkpoint error Mark Abraham
[gmx-users] Replica exchange checkpoint error Mark Abraham
[gmx-users] Replica exchange checkpoint error 金瑞涛
[gmx-users] resuming run rose rahmani
[gmx-users] resuming run Mark Abraham
[gmx-users] resuming run Rose
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Justin Lemkul
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Justin Lemkul
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Justin Lemkul
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Mark Abraham
[gmx-users] rlist Mark Abraham
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist Faezeh Pousaneh
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] rlist- group scheme Mark Abraham
[gmx-users] rlist- group scheme Faezeh Pousaneh
[gmx-users] RMSF YanhuaOuyang
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] Rupture force definition Justin Lemkul
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] Rupture force definition Justin Lemkul
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] Rupture force definition Justin Lemkul
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] Rupture force definition Justin Lemkul
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] Rupture force definition Justin Lemkul
[gmx-users] Rupture force definition Rakesh Mishra
[gmx-users] salvation free energy - gmx bar Shadfar, Shamim
[gmx-users] SDS initial setup zaved at tezu.ernet.in
[gmx-users] SDS initial setup Justin Lemkul
[gmx-users] SDS initial setup André Farias de Moura
[gmx-users] SDS initial setup Dallas Warren
[gmx-users] SDS initial setup zaved at tezu.ernet.in
[gmx-users] SDS initial setup Justin Lemkul
[gmx-users] selections dgfd dgdfg
[gmx-users] Separate removal of COM motion Ángel Piñeiro (R)
[gmx-users] Simulation freezes but the job keeps on running Searle Duay
[gmx-users] Simulation freezes but the job keeps on running Åke Sandgren
[gmx-users] Simulation freezes but the job keeps on running Searle Duay
[gmx-users] Simulation freezes but the job keeps on running Szilárd Páll
[gmx-users] Simulation freezes but the job keeps on running Åke Sandgren
[gmx-users] situation where ligand is connected to amino acid MD
[gmx-users] situation where ligand is connected to amino acid Justin Lemkul
[gmx-users] situation where ligand is connected to amino acid Zheng Ruan
[gmx-users] situation where ligand is connected to amino acid Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Mark Abraham
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Mark Abraham
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Justin Lemkul
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat MD
[gmx-users] six member ring won't stay flat Mark Abraham
[gmx-users] Tests with Threadripper and dual gpu setup Harry Mark Greenblatt
[gmx-users] The official release of GROMACS 2018 Mark Abraham
[gmx-users] The official release of GROMACS 2018 ; Re: gromacs.org_gmx-users Digest, Vol 165, Issue 39 Adarsh V. K.
[gmx-users] Three different diffusivities by "gmx msd" / Johannes Hörmann
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] tilt angle for POPC Justin Lemkul
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] tilt angle for POPC Justin Lemkul
[gmx-users] tilt angle for POPC Justin Lemkul
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] tilt angle for POPC Justin Lemkul
[gmx-users] tilt angle for POPC Mohsen Ramezanpour
[gmx-users] Time step in umbrella sampling rose rahmani
[gmx-users] to generate phosphotyrosine topology farial tavakoli
[gmx-users] topology for exited electronic state dgfd dgdfg
[gmx-users] topology for exited electronic state (dgfd dgdfg) Groenhof, Gerrit
[gmx-users] TP2 problem farial tavakoli
[gmx-users] TP2 problem Justin Lemkul
[gmx-users] TP2 problem farial tavakoli
[gmx-users] TP2 problem Justin Lemkul
[gmx-users] TP2 problem farial tavakoli
[gmx-users] TP2 problem farial tavakoli
[gmx-users] TP2 problem Justin Lemkul
[gmx-users] TP2 problem farial tavakoli
[gmx-users] Trying to use AMBER parameters in GROMACS Crystal Vander Zanden
[gmx-users] Trying to use AMBER parameters in GROMACS Qinghua Liao
[gmx-users] Trying to use AMBER parameters in GROMACS Crystal Vander Zanden
[gmx-users] Umbrella Sampling Moradzadeh, Alireza
[gmx-users] Umbrella Sampling Justin Lemkul
[gmx-users] Umbrella sampling - Pull distance is larger than 0.49 times box size error 金瑞涛
[gmx-users] Umbrella sampling - Pull distance is larger than 0.49 times box size error Shrinath Kumar
[gmx-users] umbrella sampling Protein_ligand complex distance calculation rose rahmani
[gmx-users] umbrella sampling Protein_ligand complex distance calculation "Ashwini Londhe"
[gmx-users] umbrella sampling Protein_ligand complex distance calculation Justin Lemkul
[gmx-users] umbrella sampling, LINCS WARNING rose rahmani
[gmx-users] umbrella sampling, LINCS WARNING Justin Lemkul
[gmx-users] Umbrella Sampling-gmx distance rose rahmani
[gmx-users] Umbrella Sampling-gmx distance Justin Lemkul
[gmx-users] Umbrella Sampling-gmx distance rose rahmani
[gmx-users] Umbrella Sampling-gmx distance Justin Lemkul
[gmx-users] Umbrella sampling-gmx distance rose rahmani
[gmx-users] Umbrella sampling-gmx distance Justin Lemkul
[gmx-users] Umbrella sampling-gmx distance rose rahmani
[gmx-users] Umbrella sampling-gmx distance João Henriques
[gmx-users] Umbrella sampling-gmx distance rose rahmani
[gmx-users] Umbrella Sampling/SMD pulling distance Shrinath Kumar
[gmx-users] Uncorrelated Samples, MBAR free energy calculations. Javad Noroozi
[gmx-users] Unphysical minimization results inconsistent within simulation Kimberly Bowal
[gmx-users] Unphysical minimization results inconsistent within simulation Kimberly Bowal
[gmx-users] Unphysical minimization results inconsistent within simulation Justin Lemkul
[gmx-users] Unphysical minimization results inconsistent within simulation Justin Lemkul
[gmx-users] Unphysical minimization results inconsistent within simulation (Kimberly Bowal) Kimberly Bowal
[gmx-users] Using AMBER parameters in GROMACS Crystal Vander Zanden
[gmx-users] Using libgromacs in a CMake project built on the fly? Mark Abraham
[gmx-users] Using libgromacs in a CMake project built on the fly? Cory J. Geesaman
[gmx-users] Vacuum in the hydrophobic part of bilayers Mohsen Ramezanpour
[gmx-users] Vacuum in the hydrophobic part of bilayers Mohsen Ramezanpour
[gmx-users] warning:Long Bond Saleheh Heidari
[gmx-users] warning:Long Bond Mark Abraham
[gmx-users] What is the most reliable way to run repeats for reproducibility? ZHANG Cheng
[gmx-users] What is the most reliable way to run repeats for reproducibility? Mark Abraham
[gmx-users] What is the most reliable way to run repeats for reproducibility? Mark Abraham
[gmx-users] What is the most reliable way to run repeats for reproducibility? ZHANG Cheng
[gmx-users] What is the most reliable way to run repeats for reproducibility? Justin Lemkul
[gmx-users] Which files does "-cpi -append" need? ZHANG Cheng
[gmx-users] Which files does "-cpi -append" need? Justin Lemkul
[gmx-users] Which files does "-cpi -append" need? ZHANG Cheng
[gmx-users] Which files does "-cpi -append" need? Justin Lemkul
[gmx-users] Which files does "-cpi -append" need? Mark Abraham
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? Justin Lemkul
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? Justin Lemkul
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? Justin Lemkul
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? Justin Lemkul
[gmx-users] why does gromacs want to draw a cmap covering my new inserted residue? MD
[gmx-users] Why gyration radius keep dropping? ZHANG Cheng
[gmx-users] Why gyration radius keep dropping? Justin Lemkul
[gmx-users] Worse GROMACS performance with better specs? Jason Loo Siau Ee
[gmx-users] Worse GROMACS performance with better specs? Kutzner, Carsten
[gmx-users] Worse GROMACS performance with better specs? Jason Loo Siau Ee

Last message date: Wed Jan 31 18:44:21 CET 2018
Archived on: Wed Jan 31 18:44:21 CET 2018

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