[gmx-users] lambda value for free energy calculation

dgfd dgdfg roinato at mail.ru
Tue Jan 9 14:08:14 CET 2018


>when should we consider temperature_lambdas, mass_lambdas,restraint_lambdas?
If hamiltonian of the system changes between initial and final states the corresponding part is given in
coul-lambdas
vdw-lambdas
bonded-lambdas
restraint-lambdas
mass-lambdas

temperature-lambdas change the external conditions (state of the thermostat) and used only for simulated tempering ( http://manual.gromacs.org/documentation/2018-rc1/user-guide/mdp-options.html#free-energy-calculations ) 


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