[gmx-users] disulfide bond missing even with -ss

[MD]

gromacs did ask me to confirm linking the two cys before the run, but I
didn't see any log saying the bond is formed.

On Sun, Jan 21, 2018 at 10:19 AM, MD <refmac5 at gmail.com> wrote:

> Hi Gromacs folks,
> I realized I kept losing disulfide bond after gmx. The length is 2.01A but
> I did use -ss when pdb2gmx. Any thoughts?
> Thanks,
> Ming
>