[gmx-users] disulfide bond missing even with -ss

[MD]

I modified the specbond.dat and change the cutoff to be 2.04A, still
nothing...

On Sun, Jan 21, 2018 at 10:23 AM, MD <refmac5 at gmail.com> wrote:

> I have also tried renaming my two CYS to be CYS2 but no luck either.
>
> On Sun, Jan 21, 2018 at 10:22 AM, MD <refmac5 at gmail.com> wrote:
>
>> gromacs did ask me to confirm linking the two cys before the run, but I
>> didn't see any log saying the bond is formed.
>>
>> On Sun, Jan 21, 2018 at 10:19 AM, MD <refmac5 at gmail.com> wrote:
>>
>>> Hi Gromacs folks,
>>> I realized I kept losing disulfide bond after gmx. The length is 2.01A
>>> but I did use -ss when pdb2gmx. Any thoughts?
>>> Thanks,
>>> Ming
>>>
>>
>>
>