[gmx-users] Groove width

David van der Spoel spoel at xray.bmc.uu.se
Sat Jun 2 21:22:28 CEST 2018

Den 2018-06-02 kl. 11:06, skrev spss4 at iacs.res.in:
> Hi all
> I am doing simulation of DNA molecule. I want to calculate groove width of
> DNA in GROMACS. How to do this? Someone please help.
> Thanks
> Sunipa
Just out of curiosity, what does that tell you? I understand it may be 
interesting for structure prediction or qualitative structure 
comparisons, but what chemistry is encoded in the groove width?

David van der Spoel, Ph.D., Professor of Biology
Head of Department, Cell & Molecular Biology, Uppsala University.
Box 596, SE-75124 Uppsala, Sweden. Phone: +46184714205.

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