[gmx-users] Groove width

[rajendra kumar]

>
>
> I am doing simulation of DNA molecule. I want to calculate groove width of
> DNA in GROMACS. How to do this? Someone please help.
>
>
​You may use do_x3dna (http://do-x3dna.readthedocs.io). It uses 3DNA in
background and works with GROMACS files.​ Package also includes tools to
analyze the large data generated from MD trajectories.