[gmx-users] Coarse Grained (Empty space In water)

Samieegohar, Mohammadreza mohammadreza.samiee at Howard.edu
Mon Jun 4 18:48:18 CEST 2018

I am ruining a nanoparticle inside water. I use coarse grained model for water and nanoparticle
My problem is:
When I run the system in NVT 298K , after some steps there is a empty area inside the water  (like a hole) while the initial structure has a good distribution for water molecules (P4).

May you help me to solve the problem ?


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