[gmx-users] name of the residue contact between two proteins

SHAHEE ISLAM islamshahee at gmail.com
Tue Jun 26 15:19:05 CEST 2018

where i have calculate the no of contact analysis by this commands
gmx mindist -f md.xtc -s eq.gro -n index.ndx -dt 1000 -d 0.5 -on
numcount.xvg -od mindist.xvg

On 6/26/18, SHAHEE ISLAM <islamshahee at gmail.com> wrote:
> hi,
> i have two protein in a system.i have already calculate the no of
> contacts between two proteins.
> now i want to caculate the name of the residues which are in the
> contact within 5 angstrom of the two protein.
> i.e the name of residues of protein1 which are in the contact with the
> residue name of the protein2. can anyone please suggest me how i can
> do this.
> thanking you
> shahee

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