[gmx-users] V2018.1 building issues

[kevin chen]

Ok, got it, thanks!

On Fri, May 11, 2018 at 10:23 AM, Mark Abraham <mark.j.abraham at gmail.com>
wrote:

> Hi,
>
> I'm surprised that was able to work in 2016, but nevertheless it was never
> designed to work and should not be relied upon. Build a separate binary for
> each hardware flavor and have the module system choose the correct one to
> load, per our installation guide
> http://manual.gromacs.org/documentation/2018/install-
> guide/index.html#portability-aspects
>
>
> Mark
>
> On Thu, May 10, 2018 at 4:17 PM kevin chen <fch6699 at gmail.com> wrote:
>
> > Hi  Gromacs Users,
> >
> > I'm having this weird issue while trying to build the new V2018.1 on
> > Stampede2, which has both SKX amd KNL nodes on it. For V2016 and older,
> in
> > order to run the same executable(mdrun_mpi), we have to build the "fat"
> > binary with " -DGMX_SIMD=AVX_512" and "-DCMAKE_C_FLAGS="-O3 -xCORE-AVX2
> > -axCORE-AVX512,MIC-AVX512 ". That actually worked just fine for V2016. We
> > can actually run simulation on both skx and knl without any issues using
> > the same binary. However, for some reason the same trick no longer works
> > with V2018.1. We tried to build V2018.1 with the exactly same building
> > script with " -DGMX_SIMD=AVX_512" option applied. This time around the
> > binary(mdrun_mpi) only works on skx node but no on knls. So I was
> wondering
> > is there any thing change since V2016 causing this issue or am I missing
> > anything here? Thanks advanced for any pointers you guys might provide.
> >
> > Our building environment,
> >
> > Currently Loaded Modules:
> >   1) intel/17.0.4   3) git/2.9.0       5) python/2.7.13   7) TACC
> >   2) impi/17.0.3    4) autotools/1.1   6) xalt/1.7.7      8) cmake/3.10.2
> >
> > Best,
> >
> > Kevin
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