May 2018 Archives by thread

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Starting: Tue May 1 00:04:50 CEST 2018
Ending: Thu May 31 19:54:06 CEST 2018
Messages: 506

• [gmx-users] some thoughts on gmx wham   Alex
  • [gmx-users] some thoughts on gmx wham   Justin Lemkul
    • [gmx-users] some thoughts on gmx wham   Alex
• [gmx-users] Simulation crashed   Sheikh Imamul Hossain
• [gmx-users] I have not been able to do dPCA   Seera Suryanarayana
• [gmx-users] Core dumped in NVT   Syed Azeem
  • [gmx-users] Core dumped in NVT   Dallas Warren
  • [gmx-users] Core dumped in NVT   Mark Abraham
• [gmx-users] -ndec option of trjconv   Jicun Li
  • [gmx-users] -ndec option of trjconv   Justin Lemkul
    • [gmx-users] -ndec option of trjconv   Mark Abraham
  • [gmx-users] -ndec option of trjconv   Jicun Li
    • [gmx-users] -ndec option of trjconv   Mark Abraham
• [gmx-users] custom topology questions   Eric Smoll
  • [gmx-users] custom topology questions   Justin Lemkul
• [gmx-users] LJ-PME with user defined non-bonded parameters   Lei
  • [gmx-users] LJ-PME with user defined non-bonded parameters   Mark Abraham
• [gmx-users] Trans Dihedral Fraction   Anjana Jayasinghe
• [gmx-users] Known but still domain decomposition   Alex
  • [gmx-users] Fwd: Known but still domain decomposition   Alex
• [gmx-users] % of H-bond occupancy   spss4 at iacs.res.in
  • [gmx-users] % of H-bond occupancy   Mark Abraham
• [gmx-users] Inconsistent non-bonded energy when using energy tables.   Samuel Ntim
  • [gmx-users] Inconsistent non-bonded energy when using energy tables.   Mark Abraham
• [gmx-users] RDF calculation   Esra kaçar
• [gmx-users] gromacs with turbomole?   Francesca Lønstad Bleken
• [gmx-users] index two groups for the distance calculation   MD
  • [gmx-users] index two groups for the distance calculation   Mark Abraham
    • [gmx-users] index two groups for the distance calculation   MD
• [gmx-users] H-Bond, regarding   RAHUL SURESH
  • [gmx-users] H-Bond, regarding   Justin Lemkul
• [gmx-users] REMD temperature_space   Sundari
  • [gmx-users] REMD temperature_space   Mark Abraham
    • [gmx-users] REMD temperature_space   Sundari
      • [gmx-users] REMD temperature_space   Sundari
      • [gmx-users] REMD temperature_space   Mark Abraham
• [gmx-users] Slowly changing the q and vdw interactions for free energy calculations   Qasim Pars
  • [gmx-users] Slowly changing the q and vdw interactions for free energy calculations   Qasim Pars
• [gmx-users] gmx densmap   Mohsen Ramezanpour
• [gmx-users] Fluctuations in HII phase   Mohsen Ramezanpour
  • [gmx-users] Fluctuations in HII phase   Justin Lemkul
    • [gmx-users] Fluctuations in HII phase   Mohsen Ramezanpour
• [gmx-users] 3. gromacs with turbomole? (Francesca L?nstad Bleken)   Groenhof, Gerrit
• [gmx-users] Charmm-Gui output to Gromacs   Frederic Schneider
  • [gmx-users] Charmm-Gui output to Gromacs   Mark Abraham
    • [gmx-users] Charmm-Gui output to Gromacs   Justin Lemkul
• [gmx-users] Covarience matrix eps file atom interval set -reg   venkat
  • [gmx-users] Covarience matrix eps file atom interval set -reg   Justin Lemkul
• [gmx-users] Gromacs 2018 and GPU   paul buscemi
  • [gmx-users] Gromacs 2018 and GPU   Mark Abraham
    • [gmx-users] Gromacs 2018 and GPU   paul buscemi
      • [gmx-users] Gromacs 2018 and GPU   Justin Lemkul
      • [gmx-users] Gromacs 2018 and GPU   paul buscemi
      • [gmx-users] Gromacs 2018 and GPU   Justin Lemkul
      • [gmx-users] Gromacs 2018 and GPU   paul buscemi
      • [gmx-users] Gromacs 2018 and GPU   Justin Lemkul
      • [gmx-users] Gromacs 2018 and GPU   Mark Abraham
      • [gmx-users] Gromacs 2018 and GPU   paul buscemi
      • [gmx-users] Gromacs 2018 and GPU   Justin Lemkul
      • [gmx-users] Gromacs 2018 and GPU   Mark Abraham
      • [gmx-users] Gromacs 2018 and GPU   paul buscemi
• [gmx-users] gmx with openmpi installed not on root   Dariush Mohammadyani
  • [gmx-users] gmx with openmpi installed not on root   Justin Lemkul
• [gmx-users] Regarding getting good performance for mdrun   Dilip.H.N
  • [gmx-users] Regarding getting good performance for mdrun   Mark Abraham
• [gmx-users] problem   Alex
  • [gmx-users] problem   Mark Abraham
    • [gmx-users] problem   Alex
      • [gmx-users] problem   Justin Lemkul
      • [gmx-users] problem   Alex
      • [gmx-users] problem   Justin Lemkul
• [gmx-users] exact number of water   Alex
  • [gmx-users] exact number of water   Justin Lemkul
• [gmx-users] Removing water   Negar Parvizi
• [gmx-users] strange GPU load distribution   Alex
  • [gmx-users] strange GPU load distribution   Justin Lemkul
    • [gmx-users] strange GPU load distribution   Alex
      • [gmx-users] strange GPU load distribution   Justin Lemkul
      • [gmx-users] strange GPU load distribution   Mark Abraham
      • [gmx-users] strange GPU load distribution   Alex
• [gmx-users] strange GPU load distribution   Alex
  • [gmx-users] strange GPU load distribution   Mark Abraham
    • [gmx-users] strange GPU load distribution   Alex
      • [gmx-users] strange GPU load distribution   Szilárd Páll
      • [gmx-users] strange GPU load distribution   Alex
      • [gmx-users] strange GPU load distribution   Alex
• [gmx-users] Regarding protein-ligand-metal complex simulations   dhaval patel
• [gmx-users] pull distance vs direction?   Alex Mathew
• [gmx-users] Index file regarding   RAHUL SURESH
  • [gmx-users] Index file regarding   Shreyas Kaptan
    • [gmx-users] Index file regarding   RAHUL SURESH
      • [gmx-users] Index file regarding   RAHUL SURESH
      • [gmx-users] Index file regarding   Justin Lemkul
      • [gmx-users] Index file regarding   Shreyas Kaptan
• [gmx-users] surface tension coupling   Oguz Gurbulak
• [gmx-users] WHAM for multiple coordinates   Shayna Hilburg
• [gmx-users] Help simulating flow   Ross Gunderson
• [gmx-users] Helical structure .itp file   rose rahmani
  • [gmx-users] Helical structure .itp file   Justin Lemkul
    • [gmx-users] Helical structure .itp file   rose rahmani
      • [gmx-users] Helical structure .itp file   Justin Lemkul
• [gmx-users] Box size   rose rahmani
  • [gmx-users] Box size   Dallas Warren
• [gmx-users] gromacs 2018 make error with multiple compilers and GPU support   Kevin Boyd
  • [gmx-users] gromacs 2018 make error with multiple compilers and GPU support   Mark Abraham
    • [gmx-users] gromacs 2018 make error with multiple compilers and GPU support   Kevin Boyd
      • [gmx-users] gromacs 2018 make error with multiple compilers and GPU support   Mark Abraham
      • [gmx-users] gromacs 2018 make error with multiple compilers and GPU support   Kevin Boyd
• [gmx-users] Secondary structure of peptides   m g
  • [gmx-users] Secondary structure of peptides   Justin Lemkul
• [gmx-users] replicates with different random seed   vijayakumar gosu
  • [gmx-users] replicates with different random seed   Alex
    • [gmx-users] replicates with different random seed   Shreyas Kaptan
• [gmx-users] pure methane condensation in NVT simulation   Ming Geng
  • [gmx-users] pure methane condensation in NVT simulation   Alex
    • [gmx-users] pure methane condensation in NVT simulation   Ming Geng
      • [gmx-users] pure methane condensation in NVT simulation   Justin Lemkul
      • [gmx-users] pure methane condensation in NVT simulation   耿明
      • [gmx-users] pure methane condensation in NVT simulation   Justin Lemkul
      • [gmx-users] pure methane condensation in NVT simulation   Ming Geng
      • [gmx-users] pure methane condensation in NVT simulation   Alex
      • [gmx-users] pure methane condensation in NVT simulation   Alex
• [gmx-users] Contraints on both angles and dihedrals   Qasim Pars
  • [gmx-users] Contraints on both angles and dihedrals   Mark Abraham
    • [gmx-users] Contraints on both angles and dihedrals   Ahmet Yildirim
      • [gmx-users] Contraints on both angles and dihedrals   Felipe Merino
      • [gmx-users] Contraints on both angles and dihedrals   Ahmet Yildirim
      • [gmx-users] Contraints on both angles and dihedrals   Mark Abraham
      • [gmx-users] Contraints on both angles and dihedrals   Ahmet Yildirim
      • [gmx-users] Contraints on both angles and dihedrals   Justin Lemkul
• [gmx-users] KCl forms crystals at c=0.15M with amber99sb-ildn   Daniel Bauer
  • [gmx-users] KCl forms crystals at c=0.15M with amber99sb-ildn   Felipe Merino
    • [gmx-users] KCl forms crystals at c=0.15M with amber99sb-ildn   Daniel Bauer
      • [gmx-users] KCl forms crystals at c=0.15M with amber99sb-ildn   Mark Abraham
      • [gmx-users] KCl forms crystals at c=0.15M with amber99sb-ildn   Justin Lemkul
• [gmx-users] Proper ensemble for lateral diffusion coefficient   Gschwend Grégoire
• [gmx-users] table_A_B   Alex
• [gmx-users] Hydration Property of protein   ISHRAT JAHAN
  • [gmx-users] Fwd: Hydration Property of protein   ISHRAT JAHAN
    • [gmx-users] Fwd: Hydration Property of protein   Dallas Warren
• [gmx-users] compressibility   Alex
• [gmx-users] the influence of the frozen wall during the adsorption   张明敏
• [gmx-users] Defining protonation in pdb2gmx input   mhuhtala at abo.fi
  • [gmx-users] Defining protonation in pdb2gmx input   Justin Lemkul
• [gmx-users] calculating work done in SMD using gromacs 5.1.2   Chinmai P
• [gmx-users] Rupture force definition   Rakesh Mishra
  • [gmx-users] Rupture force definition   Justin Lemkul
    • [gmx-users] Rupture force definition   Rakesh Mishra
      • [gmx-users] Rupture force definition   Justin Lemkul
      • [gmx-users] Rupture force definition   Rakesh Mishra
      • [gmx-users] Rupture force definition   Justin Lemkul
• [gmx-users] Improper dihedrals ordering issue   Hemalatha Jayabal
  • [gmx-users] Improper dihedrals ordering issue   Justin Lemkul
• [gmx-users] Restarting crashed simmulation.   neelam wafa
  • [gmx-users] Restarting crashed simmulation.   Justin Lemkul
    • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   Justin Lemkul
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   Justin Lemkul
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   Justin Lemkul
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   Justin Lemkul
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   Mark Abraham
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
      • [gmx-users] Restarting crashed simmulation.   Justin Lemkul
      • [gmx-users] Restarting crashed simmulation.   Mark Abraham
      • [gmx-users] Restarting crashed simmulation.   neelam wafa
• [gmx-users] Non integer charge value   Hemalatha Jayabal
  • [gmx-users] Non integer charge value   Justin Lemkul
    • [gmx-users] Non integer charge value   Hemalatha Jayabal
      • [gmx-users] Non integer charge value   Justin Lemkul
      • [gmx-users] Non integer charge value   Hemalatha Jayabal
      • [gmx-users] Non integer charge value   Hemalatha Jayabal
      • [gmx-users] Non integer charge value   Justin Lemkul
• [gmx-users] V2018.1 building issues   kevin chen
  • [gmx-users] V2018.1 building issues   Mark Abraham
    • [gmx-users] V2018.1 building issues   kevin chen
• [gmx-users] calculating work done in SMD using gromacs 5.1.2   Chinmai P
• [gmx-users] Bias potential during umbrella sampling   Meena Singh
  • [gmx-users] Bias potential during umbrella sampling   Viveca Lindahl
• [gmx-users] Distribution of water polarization   rose rahmani
  • [gmx-users] Distribution of water polarization   Justin Lemkul
    • [gmx-users] Distribution of water polarization   rose rahmani
      • [gmx-users] Distribution of water polarization   Justin Lemkul
      • [gmx-users] Distribution of water polarization   rose rahmani
• [gmx-users] gmx potential command   m g
• [gmx-users] Implicit membrane in Gromacs, regarding   RAHUL SURESH
  • [gmx-users] Implicit membrane in Gromacs, regarding   Mark Abraham
    • [gmx-users] Implicit membrane in Gromacs, regarding   RAHUL SURESH
• [gmx-users] SMD regarding   RAHUL SURESH
  • [gmx-users] SMD regarding   Mark Abraham
    • [gmx-users] SMD regarding   RAHUL SURESH
      • [gmx-users] SMD regarding   Justin Lemkul
      • [gmx-users] SMD regarding   RAHUL SURESH
• [gmx-users] Problem with gmx clustsize ..(Not enough memory. Failed to calloc)   Sergio Garay
  • [gmx-users] Problem with gmx clustsize ..(Not enough memory. Failed to calloc)   Mark Abraham
• [gmx-users] Gmx insert   rose rahmani
  • [gmx-users] Gmx insert   Justin Lemkul
• [gmx-users] GROMACS IRC channel   Daniel Brendle
  • [gmx-users] GROMACS IRC channel   Mark Abraham
    • [gmx-users] GROMACS IRC channel   Alex
      • [gmx-users] GROMACS IRC channel   Mark Abraham
      • [gmx-users] GROMACS IRC channel   Alex
• [gmx-users] free energy landscape   Rezgar Pakravan
  • [gmx-users] free energy landscape   Shreyas Kaptan
• [gmx-users] insert-molecules results in molecules sticking out of box, could "solvate" face an issue?   Anuradha Bhat
  • [gmx-users] insert-molecules results in molecules sticking out of box, could "solvate" face an issue?   Mark Abraham
• [gmx-users] (no subject)   Srijan Singh
  • [gmx-users] (no subject)   Mark Abraham
    • [gmx-users] (no subject)   Srijan Singh
• [gmx-users] multiple ion species in a single structure.   Anna Vernon
  • [gmx-users] multiple ion species in a single structure.   Mark Abraham
• [gmx-users] multiple ion species in a single structure.   Alex
• [gmx-users] Problem with gmx clustsize ..(Not enough memory. Failed to calloc)   Sergio Garay
  • [gmx-users] Problem with gmx clustsize ..(Not enough memory. Failed to calloc)   David van der Spoel
• [gmx-users] Solvating a non-orthogonal box   Anuradha Bhat
  • [gmx-users] Solvating a non-orthogonal box   Dallas Warren
• [gmx-users] Final structure broken   Dhumal, Nilesh
  • [gmx-users] Final structure broken   Justin Lemkul
  • [gmx-users] Final structure broken   Dhumal, Nilesh
    • [gmx-users] Final structure broken   Justin Lemkul
  • [gmx-users] Final structure broken   Quyen V. Vu
• [gmx-users] gmx potential   m g
• [gmx-users] Solvating a non-orthogonal box   Anuradha Bhat
  • [gmx-users] Solvating a non-orthogonal box   Dallas Warren
• [gmx-users] calculating energy between certain groups   Irem Altan
  • [gmx-users] calculating energy between certain groups   Justin Lemkul
    • [gmx-users] calculating energy between certain groups   Irem Altan
      • [gmx-users] calculating energy between certain groups   Tasneem Kausar
      • [gmx-users] calculating energy between certain groups   Justin Lemkul
      • [gmx-users] calculating energy between certain groups   Irem Altan
      • [gmx-users] calculating energy between certain groups   Justin Lemkul
• [gmx-users] Pulling two groups in opposite direction   Naba
  • [gmx-users] Pulling two groups in opposite direction   Justin Lemkul
• [gmx-users] secondary structure analysis   SHAHEE ISLAM
  • [gmx-users] secondary structure analysis   Joe Jordan
    • [gmx-users] secondary structure analysis   SHAHEE ISLAM
      • [gmx-users] secondary structure analysis   Joe Jordan
      • [gmx-users] secondary structure analysis   SHAHEE ISLAM
      • [gmx-users] secondary structure analysis   Joe Jordan
• [gmx-users] Regarding MD simulations involving metal ion (Mn)   dhaval patel
  • [gmx-users] Regarding MD simulations involving metal ion (Mn)   Paul bauer
• [gmx-users] Topology file   Salman Zarrini
• [gmx-users] C6-C12 table potential   Alex
  • [gmx-users] C6-C12 table potential   Mark Abraham
    • [gmx-users] C6-C12 table potential   Alex
• [gmx-users] partial exclusion of interactions within 1-4   Alex
  • [gmx-users] partial exclusion of interactions within 1-4   Alex
    • [gmx-users] partial exclusion of interactions within 1-4   Mark Abraham
      • [gmx-users] partial exclusion of interactions within 1-4   Alex
      • [gmx-users] partial exclusion of interactions within 1-4   Mark Abraham
      • [gmx-users] partial exclusion of interactions within 1-4   Alex
      • [gmx-users] partial exclusion of interactions within 1-4   Mark Abraham
      • [gmx-users] partial exclusion of interactions within 1-4   Alex
      • [gmx-users] partial exclusion of interactions within 1-4   Mark Abraham
• [gmx-users] Protein protein complex simulation to be done with respect to observe changes in temperature   SHYANTANI MAITI
• [gmx-users] Pulling two groups in opposite direction   Naba
  • [gmx-users] Pulling two groups in opposite direction   Justin Lemkul
• [gmx-users] Clarification on gmx mindist   Sampurna Mukherjee
• [gmx-users] Reference atoms for gmx mdmat and gmx rmsf   Sampurna Mukherjee
  • [gmx-users] Reference atoms for gmx mdmat and gmx rmsf   Joe Jordan
    • [gmx-users] Reference atoms for gmx mdmat and gmx rmsf   Sampurna Mukherjee
      • [gmx-users] Reference atoms for gmx mdmat and gmx rmsf   Joe Jordan
• [gmx-users] Pulling two groups in opposite direction   Naba
• [gmx-users] Partial charges calculation   rose rahmani
  • [gmx-users] Partial charges calculation   Justin Lemkul
• [gmx-users] Using GPU to run gromacs 5.1.5   Sabreen Farnaz
  • [gmx-users] Using GPU to run gromacs 5.1.5   Justin Lemkul
• [gmx-users] GROMACS- MAGNETIC FIELD   حبيبة علي
  • [gmx-users] GROMACS- MAGNETIC FIELD   Salman Zarrini
    • [gmx-users] GROMACS- MAGNETIC FIELD   حبيبة علي
• [gmx-users] stress calculation for version 5.0 and plus   Tong Li
• [gmx-users] Gromacs Input Fiels of Interface Forcefield   Krzysztof Kolman
• [gmx-users] Pulling two groups in opposite direction   Naba
  • [gmx-users] Pulling two groups in opposite direction   Justin Lemkul
• [gmx-users] Box size to be considered for a protein of length 500 residues and dimension of protein is 6.5nm maximum.   SHYANTANI MAITI
  • [gmx-users] Box size to be considered for a protein of length 500 residues and dimension of protein is 6.5nm maximum.   Justin Lemkul
• [gmx-users] RDF   Alex
  • [gmx-users] RDF   Peter Kroon
• [gmx-users] "energygrps" option for separating Bonded interactions   Debdas Dhabal
  • [gmx-users] "energygrps" option for separating Bonded interactions   Justin Lemkul
    • [gmx-users] "energygrps" option for separating Bonded interactions   Debdas Dhabal
      • [gmx-users] "energygrps" option for separating Bonded interactions   Debdas Dhabal
      • [gmx-users] "energygrps" option for separating Bonded interactions   Justin Lemkul
      • [gmx-users] "energygrps" option for separating Bonded interactions   Debdas Dhabal
• [gmx-users] gromacs.org_gmx-users Digest, Vol 169, Issue 67   SHYANTANI MAITI
  • [gmx-users] gromacs.org_gmx-users Digest, Vol 169, Issue 67   Mark Abraham
• [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Soham Sarkar
  • [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Mark Abraham
    • [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Soham Sarkar
      • [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Justin Lemkul
      • [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Soham Sarkar
      • [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Justin Lemkul
      • [gmx-users] Does a logical pressure (1 Bar) can be reached in REMD?   Soham Sarkar
• [gmx-users] (no subject)   alex rayevsky
• [gmx-users] Electric field or CompEl protocol?   alex rayevsky
  • [gmx-users] Electric field or CompEl protocol?   Alex
• [gmx-users] Electric field or CompEl protocol?   alex rayevsky
  • [gmx-users] Electric field or CompEl protocol?   Alex
• [gmx-users] Electric field or CompEl protocol?   alex rayevsky
• [gmx-users] Quantification of overcharging   Soham Sarkar
• [gmx-users] How to put constraint   Tom
  • [gmx-users] How to put constraint   Justin Lemkul
• [gmx-users] mdrun error   rose rahmani
  • [gmx-users] mdrun error   Justin Lemkul
    • [gmx-users] mdrun error   rose rahmani
      • [gmx-users] mdrun error   Justin Lemkul
• [gmx-users] Gromacs installation with GPU support in Windows 7   Jia Hong
  • [gmx-users] Gromacs installation with GPU support in Windows 7   Aleksei Iupinov
    • [gmx-users] Gromacs installation with GPU support in Windows 7   Jia Hong
      • [gmx-users] Gromacs installation with GPU support in Windows 7   Jia Hong
• [gmx-users] Quantification of overcharging   Soham Sarkar
  • [gmx-users] Quantification of overcharging   David van der Spoel
• [gmx-users] Specbond.dat file   Hemalatha Jayabal
  • [gmx-users] Specbond.dat file   Paul Bauer
• [gmx-users] Free energy and dhdl calculation in Gromacs   Aho, Noora
• [gmx-users] Specbond.dat file   Hemalatha Jayabal
  • [gmx-users] Specbond.dat file   Mark Abraham
• [gmx-users] make a rigid nanoparticle (internally freeze body while it can move as a rigid body )   Samieegohar, Mohammadreza
  • [gmx-users] make a rigid nanoparticle (internally freeze body while it can move as a rigid body )   Mark Abraham
    • [gmx-users] make a rigid nanoparticle (internally freeze body while it can move as a rigid body )   Samieegohar, Mohammadreza
• [gmx-users] md simulation of a protein in mixture of water and DMSO   Atila Petrosian
  • [gmx-users] md simulation of a protein in mixture of water and DMSO   Mark Abraham
• [gmx-users] gmx potential   m g
• [gmx-users] g_cluster error   Dr. Seema Mishra
• [gmx-users] S-S bond   rose rahmani
• [gmx-users] is there a suitable FF for perovskite?   Tong Li
• [gmx-users] Molar heat capacity calculations   Sushant Sharma
  • [gmx-users] Fwd: Molar heat capacity calculations   Sushant Sharma
• [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
  • [gmx-users] regarding rmsd calculation of protein   Soham Sarkar
    • [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
      • [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
      • [gmx-users] regarding rmsd calculation of protein   Soham Sarkar
      • [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
      • [gmx-users] regarding rmsd calculation of protein   Soham Sarkar
      • [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
      • [gmx-users] regarding rmsd calculation of protein   Soham Sarkar
      • [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
      • [gmx-users] regarding rmsd calculation of protein   Soham Sarkar
      • [gmx-users] regarding rmsd calculation of protein   SHAHEE ISLAM
      • [gmx-users] regarding rmsd calculation of protein   Soham Sarkar
• [gmx-users] Simulating protein-lipid interactions   Gonzalez Fernandez, Cristina
  • [gmx-users] Simulating protein-lipid interactions   Smith, Micholas D.
    • [gmx-users] Simulating protein-lipid interactions   Kevin Boyd
• [gmx-users] Using the command -maxwarn   sai manohar
  • [gmx-users] Using the command -maxwarn   Mark Abraham
    • [gmx-users] Using the command -maxwarn   sai manohar
• [gmx-users] AMP_simulation   niki24 at tezu.ernet.in
  • [gmx-users] AMP_simulation   Soham Sarkar
  • [gmx-users] AMP_simulation   RAHUL SURESH
  • [gmx-users] AMP_simulation   Dallas Warren
• [gmx-users] Temporary disruption to tutorials sites   Justin Lemkul
• [gmx-users] Production Run mdp file for Umbrella Sampling   Nidhin Thomas
• [gmx-users] Shifting in minimization   Alex
  • [gmx-users] Shifting in minimization   Mark Abraham
    • [gmx-users] Shifting in minimization   Alex
      • [gmx-users] Shifting in minimization   Mark Abraham
• [gmx-users] Simulation crashed, fatal error: Bond length not finite and warning: Pressure scaling more than 1%.   zeineb SI CHAIB
  • [gmx-users] Simulation crashed, fatal error: Bond length not finite and warning: Pressure scaling more than 1%.   Quyen V. Vu
    • [gmx-users] Simulation crashed, fatal error: Bond length not finite and warning: Pressure scaling more than 1%.   Kroon, P.C.
      • [gmx-users] Simulation crashed, fatal error: Bond length not finite and warning: Pressure scaling more than 1%.   Kevin Boyd
  • [gmx-users] Simulation crashed, fatal error: Bond length not finite and warning: Pressure scaling more than 1%.   zeineb SI CHAIB
• [gmx-users] Purpose of using (reflecting) WALL in MD simulations?   rose rahmani
• [gmx-users] MD simulation error   Anjana Jayasinghe
• [gmx-users] Colchicine topology   Harutyun Sahakyan
  • [gmx-users] Colchicine topology   Mark Abraham
    • [gmx-users] Colchicine topology   Alex
      • [gmx-users] Colchicine topology   Mark Abraham
      • [gmx-users] Colchicine topology   Alex
      • [gmx-users] Colchicine topology   Soham Sarkar
• [gmx-users] REMD   Eric Smoll
• [gmx-users] Problem in installing GROMACS 2018   Ali Ahmed
  • [gmx-users] Problem in installing GROMACS 2018   Benson Muite
    • [gmx-users] Problem in installing GROMACS 2018   Ali Ahmed
  • [gmx-users] Problem in installing GROMACS 2018   Soham Sarkar
    • [gmx-users] Problem in installing GROMACS 2018   Ali Ahmed
      • [gmx-users] Problem in installing GROMACS 2018   Kevin Boyd
      • [gmx-users] Problem in installing GROMACS 2018   Ali Ahmed
      • [gmx-users] Problem in installing GROMACS 2018   Mark Abraham
      • [gmx-users] Problem in installing GROMACS 2018   Ali Ahmed
      • [gmx-users] Problem in installing GROMACS 2018   Mark Abraham
• [gmx-users] topology file   mostafa paknia
  • [gmx-users] topology file   Soham Sarkar
  • [gmx-users] topology file   Justin Lemkul
• [gmx-users] Regarding calculation of SDF   Dilip.H.N
  • [gmx-users] Regarding calculation of SDF   Dallas Warren
  • [gmx-users] Regarding calculation of SDF   Dilip.H.N
  • [gmx-users] Regarding calculation of SDF   Mark Abraham
• [gmx-users] gromacs.org_gmx-users Digest, Vol 169, Issue 89   niki24 at tezu.ernet.in
• [gmx-users] Solvation of the bilayer   Amali Guruge
  • [gmx-users] Solvation of the bilayer   Alex
• [gmx-users] g_sas   Gonzalez Fernandez, Cristina
  • [gmx-users] g_sas   András Ferenc WACHA
• [gmx-users] gromacs.org_gmx-users Digest, Vol 169, Issue 96   niki24 at tezu.ernet.in
• [gmx-users] D Gsolv   Gonzalez Fernandez, Cristina
• [gmx-users] calculation of distance between the center of geometry of two proteins   SHAHEE ISLAM
  • [gmx-users] calculation of distance between the center of geometry of two proteins   Soham Sarkar
    • [gmx-users] calculation of distance between the center of geometry of two proteins   SHAHEE ISLAM
      • [gmx-users] calculation of distance between the center of geometry of two proteins   SHAHEE ISLAM
      • [gmx-users] calculation of distance between the center of geometry of two proteins   Soham Sarkar
      • [gmx-users] calculation of distance between the center of geometry of two proteins   SHAHEE ISLAM
      • [gmx-users] calculation of distance between the center of geometry of two proteins   Soham Sarkar
      • [gmx-users] calculation of distance between the center of geometry of two proteins   Mark Abraham
• [gmx-users] QM-MM   sai manohar
• [gmx-users] velocity   Atila Petrosian
  • [gmx-users] velocity   Mark Abraham
    • [gmx-users] velocity   Quyen V. Vu
• [gmx-users] QM-MM (sai manohar)   Groenhof, Gerrit
  • [gmx-users] QM-MM (sai manohar)   sai manohar
• [gmx-users] (no subject)   niki24 at tezu.ernet.in
• [gmx-users] Partial Charge precision   Momin Ahmad
  • [gmx-users] Partial Charge precision   Justin Lemkul
    • [gmx-users] Partial Charge precision   Momin Ahmad
• [gmx-users] md simulation of oil hydrocarbon?   Atila Petrosian
• [gmx-users] velocity   Atila Petrosian
  • [gmx-users] velocity   Justin Lemkul
• [gmx-users] velocity   Atila Petrosian
  • [gmx-users] velocity   Mark Abraham
• [gmx-users] velocity   Atila Petrosian
• [gmx-users] md simulation of oil hydrocarbon   Atila Petrosian
  • [gmx-users] md simulation of oil hydrocarbon   Ali Ahmed
• [gmx-users] how to select backbone of martini protein cg   SHAHEE ISLAM
  • [gmx-users] how to select backbone of martini protein cg   SHAHEE ISLAM
• [gmx-users] Force Field Parameters   Momin Ahmad
• [gmx-users] Periodic Molecules   Lakshman Ji Verma
  • [gmx-users] Periodic Molecules   Justin Lemkul
    • [gmx-users] Periodic Molecules   Lakshman Ji Verma
      • [gmx-users] Periodic Molecules   Justin Lemkul
      • [gmx-users] Periodic Molecules   Lakshman Ji Verma
• [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Atila Petrosian
  • [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Justin Lemkul
• [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Atila Petrosian
  • [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Justin Lemkul
• [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Atila Petrosian
  • [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Justin Lemkul
• [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Atila Petrosian
  • [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Justin Lemkul
    • [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Smith, Micholas D.
• [gmx-users] topology   mostafa paknia
  • [gmx-users] topology   Justin Lemkul
• [gmx-users] Error in NPT simulation   Nagasree Garapati
  • [gmx-users] Error in NPT simulation   Justin Lemkul
• [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Atila Petrosian
  • [gmx-users] md simulation of oil hydrocarbon / L-OPLS   Smith, Micholas D.
• [gmx-users] backbone contact analysis of martini cg protein   SHAHEE ISLAM
  • [gmx-users] backbone contact analysis of martini cg protein   SHAHEE ISLAM
    • [gmx-users] backbone contact analysis of martini cg protein   Alex
• [gmx-users] How to define a vector for gangle command   delara aghaie
  • [gmx-users] How to define a vector for gangle command   Justin Lemkul
• [gmx-users] gmx conver-tpr error   Amali Guruge
  • [gmx-users] gmx conver-tpr error   Soham Sarkar
  • [gmx-users] gmx conver-tpr error   Justin Lemkul
    • [gmx-users] gmx conver-tpr error   Amali Guruge
• [gmx-users] topology   Justin Lemkul
• [gmx-users] Looking for a Gromacs' tool to find lipid molecules which are located in a shell in the x-y plane around a drug molecule intercalated in a bilayer   Seyed Mojtaba Rezaei Sani
  • [gmx-users] Looking for a Gromacs' tool to find lipid molecules which are located in a shell in the x-y plane around a drug molecule intercalated in a bilayer   Mark Abraham
    • [gmx-users] Looking for a Gromacs' tool to find lipid molecules which are located in a shell in the x-y plane around a drug molecule intercalated in a bilayer   Seyed Mojtaba Rezaei Sani
      • [gmx-users] Looking for a Gromacs' tool to find lipid molecules which are located in a shell in the x-y plane around a drug molecule intercalated in a bilayer   Mark Abraham
• [gmx-users] rdf at contact   Faezeh Pousaneh
  • [gmx-users] rdf at contact   Dallas Warren
  • [gmx-users] rdf at contact   Faezeh Pousaneh
• [gmx-users] Restrain on principal axis to inhibit protein rotation   Soeren von Buelow
• [gmx-users] Problem with constrains and degrees of freedom   Sergi Ruiz Barragán
• [gmx-users] Confusing gmx tMPI Error   William Barber
  • [gmx-users] Confusing gmx tMPI Error   Mark Abraham
• [gmx-users] Install Gromacs Cuda MacBook pro with eGPU OS X 10.13.4   Владимир Богданов
  • [gmx-users] Install Gromacs Cuda MacBook pro with eGPU OS X 10.13.4   Szilárd Páll
• [gmx-users] Virtual sites causing npt simulation instabilities   Eisenhart, Andrew (eisenhaw)
  • [gmx-users] Virtual sites causing npt simulation instabilities   Dallas Warren
  • [gmx-users] Virtual sites causing npt simulation instabilities   Justin Lemkul
    • [gmx-users] Virtual sites causing npt simulation instabilities   Mark Abraham
      • [gmx-users] Virtual sites causing npt simulation instabilities   Eisenhart, Andrew (eisenhaw)
• [gmx-users] Looking for a Gromacs' tool to find lipid molecules which are located in a shell in the x-y plane around a drug molecule intercalated in a bilayer   Seyed Mojtaba Rezaei Sani
• [gmx-users] there are fewer frames in your trajectory than there are degrees of freedom in your system.   venkat
• [gmx-users] Error in md simulation   Gonzalez Fernandez, Cristina
  • [gmx-users] Error in md simulation   Mark Abraham
    • [gmx-users] Error in md simulation   Gonzalez Fernandez, Cristina
      • [gmx-users] Error in md simulation   Mark Abraham
• [gmx-users] Make a rigid Nanoparticle   Samieegohar, Mohammadreza
  • [gmx-users] Make a rigid Nanoparticle   Justin Lemkul
• [gmx-users] AMP_itp   niki24 at tezu.ernet.in
  • [gmx-users] AMP_itp   Justin Lemkul
• [gmx-users] rmsd,   Amin Rouy
  • [gmx-users] rmsd,   Justin Lemkul
    • [gmx-users] rmsd,   Amin Rouy
      • [gmx-users] rmsd,   Justin Lemkul
      • [gmx-users] rmsd,   Amin Rouy
      • [gmx-users] rmsd,   Justin Lemkul
      • [gmx-users] rmsd,   Amin Rouy

Last message date: Thu May 31 19:54:06 CEST 2018
Archived on: Thu May 31 19:54:08 CEST 2018

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