[gmx-users] secondary structure analysis

[SHAHEE ISLAM]

i have installed dssp2.04 in usr/local/bin.

On 5/16/18, Joe Jordan <e.jjordan12 at gmail.com> wrote:
> You have to point to where you have dssp installed. This may require you to
> install dssp.
>
> On Wed, May 16, 2018 at 11:41 AM, SHAHEE ISLAM <islamshahee at gmail.com>
> wrote:
>
>> i want calculate the secondary structure of protein in gromacs.but
>> when i am using this command
>>
>> do_dssp -f dynamic.xtc -s dynamic.tpr -sc scount.xvg -o ss.xpm -dt 10
>>
>> getting this error
>> Program do_dssp, VERSION 4.5.5
>> Source code file: /build/buildd/gromacs-4.5.5/src/tools/do_dssp.c, line:
>> 572
>>
>> Fatal error:
>> Failed to execute command: /usr/local/bin/dssp -na ddsbJ3bY ddT7Ubn7 >
>> /dev/null 2> /dev/null
>> For more information and tips for troubleshooting, please check the
>> GROMACS
>> website at http://www.gromacs.org/Documentation/Errors
>>       how i will solve this problem.please help me
>> --
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>
>
>
> --
> Joe Jordan
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